diff --git a/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md index a52b8c05afba7c08dafebc7ff2099d855578a932..b6be681b64a0424d777b86a52aba1a49fb72a916 100644 --- a/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md +++ b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md @@ -21,12 +21,13 @@ ChIPseq analyis done using hg19. * Go to http://great.stanford.edu/public/html/ -* Choose test and backgroung regions <details> - <summary markdown="span">How how you chose the background regions?</summary> +* Choose test and backgroung regions + <details> + <summary markdown="span">How how you chose the background regions?</summary> -Depends on your question: Do you want to compare the functional enrichment in comparison to any random region of the region (Whole genome) or, else, in comparison to a given subset of regions that may have a specific genomic context (e.g. all the SUMO peaks that change along the CC). + Depends on your question: Do you want to compare the functional enrichment in comparison to any random region of the region (Whole genome) or, else, in comparison to a given subset of regions that may have a specific genomic context (e.g. all the SUMO peaks that change along the CC). -</details> + </details> * Define association rules. What's the main effect of the the different rules?