From db37edfc55b1929133c2f78a6cdc29767cd40d8c Mon Sep 17 00:00:00 2001 From: Claudia CHICA <claudia.chica@pasteur.fr> Date: Thu, 19 May 2022 21:45:25 +0200 Subject: [PATCH] Update Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md --- Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md index a52b8c0..b6be681 100644 --- a/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md +++ b/Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md @@ -21,12 +21,13 @@ ChIPseq analyis done using hg19. * Go to http://great.stanford.edu/public/html/ -* Choose test and backgroung regions <details> - <summary markdown="span">How how you chose the background regions?</summary> +* Choose test and backgroung regions + <details> + <summary markdown="span">How how you chose the background regions?</summary> -Depends on your question: Do you want to compare the functional enrichment in comparison to any random region of the region (Whole genome) or, else, in comparison to a given subset of regions that may have a specific genomic context (e.g. all the SUMO peaks that change along the CC). + Depends on your question: Do you want to compare the functional enrichment in comparison to any random region of the region (Whole genome) or, else, in comparison to a given subset of regions that may have a specific genomic context (e.g. all the SUMO peaks that change along the CC). -</details> + </details> * Define association rules. What's the main effect of the the different rules? -- GitLab