From 118df38827819ce6561f78c8446093409a8b07ee Mon Sep 17 00:00:00 2001
From: Victoire  BAILLET <victoire.baillet@pasteur.fr>
Date: Tue, 25 Feb 2025 18:13:14 +0100
Subject: [PATCH] update w adapters seq from atacflow (active motif mainly) and
 purge to rm dups w preexisting adapters in file

---
 config/adapt_atac.fa | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/config/adapt_atac.fa b/config/adapt_atac.fa
index 76599c4..b822629 100644
--- a/config/adapt_atac.fa
+++ b/config/adapt_atac.fa
@@ -1,5 +1,5 @@
 ##list of ATACseq adapters
->Adapter_trimming
+>Nextera_Adapter_trimming
 CTGTCTCTTATACACATCT
 >Nextera_mate_pair_adapter_trimming
 CTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG
@@ -9,3 +9,15 @@ TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG
 GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG
 >PCR_primers_r1
 CAAGCAGAAGACGGCATACGAGATGTCTCGTGGGCTCGG
+
+##Adapters used in ActiveMotif ATACseq kit
+>ActiveMotif_adapter_R[12] #to be trimmed from both R1 & R2 
+CTGTCTCTTATACACATCT
+>ActiveMotif_full_i5_adapter #to be trimmed from R1 
+AATGATACGGCGACCACCGAGATCTACACNNNNNNNNTCGTCGGCAGCGTC
+>ActiveMotif_full_i7_adapter #to be trimmed from R2 
+CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTCTCGTGGGCTCGG
+
+
+#for the sake of information : sequence (12bp) used by FastQC to detect Nextera transposase adapter
+#CTGTCTCTTATA 
-- 
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