From 3045e84bd98a73d56652bd0da40bd5c286f004e0 Mon Sep 17 00:00:00 2001
From: Rachel  LEGENDRE <rachel.legendre@pasteur.fr>
Date: Tue, 2 Nov 2021 11:03:37 +0100
Subject: [PATCH] put default tmpdir as $TMPDIR to solve potential issues with
 picard and spp

---
 config/config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/config/config.yaml b/config/config.yaml
index 0d2eab3..6150f95 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -36,7 +36,7 @@ input_extension: '.fastq.gz'
 # directory where you want to store results
 analysis_dir: /path/to/directory/analysis
 # tmpdir: write tempory file on this directory (default /tmp/, but could be "/local/scratch/")
-tmpdir: "/tmp/"
+tmpdir: $TMPDIR
 
 #===============================================================================
 # Design information. These informations will be used during the
-- 
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