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ePeak
Commits
49a78ce0
Commit
49a78ce0
authored
May 03, 2022
by
Rachel LEGENDRE
Browse files
mistyping in deseq2 method
parent
d82790d4
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1
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config/config.yaml
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49a78ce0
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@@ -252,10 +252,10 @@ intersectionApproach:
#
# :Parameters:
#
# - method: 'Limma' or 'DE
s
eq2'
# - method: 'Limma' or 'DE
S
eq2'
# - spikes: If you have spikes, set to 'yes' will use spike normalization
# - normalization: 'geometrical', 'spikes', 'scale', 'quantile', 'cyclicloess'
# - pAdjustMethod: Limma and DE
s
eq2 options. For Limma, 'none', 'BH', 'BY' and 'holm' are possible.
# - pAdjustMethod: Limma and DE
S
eq2 options. For Limma, 'none', 'BH', 'BY' and 'holm' are possible.
# For DESeq2, 'holm', 'hochberg', 'hommel', 'bonferroni', 'BH', 'BY', 'fdr' and 'none' are accepted.
# - alpha: threshold for differential analysis. Default: 0.05
# - batch: NULL or a vector with batch effects as c("","")
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