Commit 49a78ce0 authored by Rachel  LEGENDRE's avatar Rachel LEGENDRE
Browse files

mistyping in deseq2 method

parent d82790d4
......@@ -252,10 +252,10 @@ intersectionApproach:
#
# :Parameters:
#
# - method: 'Limma' or 'DEseq2'
# - method: 'Limma' or 'DESeq2'
# - spikes: If you have spikes, set to 'yes' will use spike normalization
# - normalization: 'geometrical', 'spikes', 'scale', 'quantile', 'cyclicloess'
# - pAdjustMethod: Limma and DEseq2 options. For Limma, 'none', 'BH', 'BY' and 'holm' are possible.
# - pAdjustMethod: Limma and DESeq2 options. For Limma, 'none', 'BH', 'BY' and 'holm' are possible.
# For DESeq2, 'holm', 'hochberg', 'hommel', 'bonferroni', 'BH', 'BY', 'fdr' and 'none' are accepted.
# - alpha: threshold for differential analysis. Default: 0.05
# - batch: NULL or a vector with batch effects as c("","")
......
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