From 4f38ac004b467b27f0681eadedd985112e64f10c Mon Sep 17 00:00:00 2001
From: Rachel LEGENDRE <rachel.legendre@pasteur.fr>
Date: Thu, 26 Aug 2021 13:53:44 +0200
Subject: [PATCH] Update README.md
---
README.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/README.md b/README.md
index a77da03..67ebbc3 100644
--- a/README.md
+++ b/README.md
@@ -14,7 +14,7 @@
## What is ChIPflow ?
-ChIPflow is a snakemake-based workflow for the analysis of ChIP-seq data from the raw fastq files to the differential analysis of transcription factor binding or histone modification marking. It streamlines critical steps like the quality assessment of the immunoprecipitation using the cross correlation and the replicate comparison for both narrow and broad peaks. For the differential analysis ChIPflow provides linear and non linear methods for normalisation between samples as well as conservative and stringent models for estimating the variance and testing the significance of the observed differences (see [chipuanar](https://gitlab.pasteur.fr/hub/chipuanar/)).
+ChIPflow is a snakemake-based workflow for the analysis of ChIP-seq data from the raw fastq files to the differential analysis of transcription factor binding or histone modification marking. It streamlines critical steps like the quality assessment of the immunoprecipitation using the cross correlation and the replicate comparison for both narrow and broad peaks. For the differential analysis ChIPflow provides linear and non linear methods for normalisation between samples as well as conservative and stringent models for estimating the variance and testing the significance of the observed differences (see [chipflowr](https://gitlab.pasteur.fr/hub/chipflowr)).
## How to install ChIPflow ?
@@ -48,7 +48,7 @@ In addition to above tools, you need to install pipeline-related tools:
- R >= 4.0.3
- spp == 1.15.2
- need following cran packages: snow, snowfail, bitops, caTools, RCurl, Rcpp, and bioconductor packages: GenomeInfoDB, genomicRanges, Rsamtools.
-- [chipuanar](https://gitlab.pasteur.fr/hub/chipuanar/)
+- [chipflowr](https://gitlab.pasteur.fr/hub/chipflowr)
# How to run ChIPflow ?
--
GitLab