diff --git a/config/adapt_atac.fa b/config/adapt_atac.fa index 76599c413b938fae2d27937729a28c212901816a..b8226294dbe441a96205d3a51c28cf572d500e4d 100644 --- a/config/adapt_atac.fa +++ b/config/adapt_atac.fa @@ -1,5 +1,5 @@ ##list of ATACseq adapters ->Adapter_trimming +>Nextera_Adapter_trimming CTGTCTCTTATACACATCT >Nextera_mate_pair_adapter_trimming CTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG @@ -9,3 +9,15 @@ TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG >PCR_primers_r1 CAAGCAGAAGACGGCATACGAGATGTCTCGTGGGCTCGG + +##Adapters used in ActiveMotif ATACseq kit +>ActiveMotif_adapter_R[12] #to be trimmed from both R1 & R2 +CTGTCTCTTATACACATCT +>ActiveMotif_full_i5_adapter #to be trimmed from R1 +AATGATACGGCGACCACCGAGATCTACACNNNNNNNNTCGTCGGCAGCGTC +>ActiveMotif_full_i7_adapter #to be trimmed from R2 +CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTCTCGTGGGCTCGG + + +#for the sake of information : sequence (12bp) used by FastQC to detect Nextera transposase adapter +#CTGTCTCTTATA