diff --git a/env.sh b/env.sh new file mode 100644 index 0000000000000000000000000000000000000000..cae15675a5555236b81b966fdce946024dc665ee --- /dev/null +++ b/env.sh @@ -0,0 +1,14 @@ +#install conda via miniconda : +follow this tuto : https://docs.conda.io/en/latest/miniconda.html#linux-installers + +#create your conda env +conda create -n snakemake +conda activate snakemake +conda config --add channels defaults +conda config --add channels bioconda +conda config --add channels conda-forge +conda install -c anaconda python +conda install -c bioconda snakemake +conda install -c anaconda pandas +conda install -c bioconda pysam +conda install -c conda-forge singularity