diff --git a/workflow/rules/bamCoverage.rules b/workflow/rules/bamCoverage.rules
index 87756b0225517370ada2c03ae42ccc855793f91b..7c8375a3be037905bda8a68be727056b35021c47 100755
--- a/workflow/rules/bamCoverage.rules
+++ b/workflow/rules/bamCoverage.rules
@@ -33,7 +33,7 @@ rule bamCoverage:
     singularity:
         "epeak.img"
     conda:
-        "envs/deeptools.yalm"
+        "envs/deeptools.yaml"
     params:
         options = bamCoverage_options
     envmodules:
diff --git a/workflow/rules/cutadapt.rules b/workflow/rules/cutadapt.rules
index 1ef341e56a5444d2410ee86293e826c7559ad5de..7d1ffa2b1065ad397630dcf9cae87ed231f8f356 100755
--- a/workflow/rules/cutadapt.rules
+++ b/workflow/rules/cutadapt.rules
@@ -37,7 +37,7 @@ rule cutadapt:
     singularity:
         "epeak.img"
     conda:
-        envs/cutadapt.yaml
+        "envs/cutadapt.yaml"
     threads: config['adapters']['threads']
     log:
         out = cutadapt_log
diff --git a/envs/bowtie2.yaml b/workflow/rules/envs/bowtie2.yaml
similarity index 100%
rename from envs/bowtie2.yaml
rename to workflow/rules/envs/bowtie2.yaml
diff --git a/envs/cutadapt.yaml b/workflow/rules/envs/cutadapt.yaml
similarity index 100%
rename from envs/cutadapt.yaml
rename to workflow/rules/envs/cutadapt.yaml
diff --git a/envs/deeptools.yaml b/workflow/rules/envs/deeptools.yaml
similarity index 100%
rename from envs/deeptools.yaml
rename to workflow/rules/envs/deeptools.yaml
diff --git a/envs/fastqc.yaml b/workflow/rules/envs/fastqc.yaml
similarity index 100%
rename from envs/fastqc.yaml
rename to workflow/rules/envs/fastqc.yaml
diff --git a/envs/featureCounts.yaml b/workflow/rules/envs/featureCounts.yaml
similarity index 100%
rename from envs/featureCounts.yaml
rename to workflow/rules/envs/featureCounts.yaml
diff --git a/envs/idr.yaml b/workflow/rules/envs/idr.yaml
similarity index 100%
rename from envs/idr.yaml
rename to workflow/rules/envs/idr.yaml
diff --git a/envs/macs2.yaml b/workflow/rules/envs/macs2.yaml
similarity index 100%
rename from envs/macs2.yaml
rename to workflow/rules/envs/macs2.yaml
diff --git a/envs/multiqc.yaml b/workflow/rules/envs/multiqc.yaml
similarity index 100%
rename from envs/multiqc.yaml
rename to workflow/rules/envs/multiqc.yaml
diff --git a/envs/picard.yaml b/workflow/rules/envs/picard.yaml
similarity index 100%
rename from envs/picard.yaml
rename to workflow/rules/envs/picard.yaml
diff --git a/envs/pysam.yaml b/workflow/rules/envs/pysam.yaml
similarity index 100%
rename from envs/pysam.yaml
rename to workflow/rules/envs/pysam.yaml
diff --git a/envs/samtools.yaml b/workflow/rules/envs/samtools.yaml
similarity index 100%
rename from envs/samtools.yaml
rename to workflow/rules/envs/samtools.yaml
diff --git a/envs/seacr.yaml b/workflow/rules/envs/seacr.yaml
similarity index 100%
rename from envs/seacr.yaml
rename to workflow/rules/envs/seacr.yaml
diff --git a/envs/spp.yaml b/workflow/rules/envs/spp.yaml
similarity index 100%
rename from envs/spp.yaml
rename to workflow/rules/envs/spp.yaml