From aec86047442a826c124948ad46a56de6eec95a0a Mon Sep 17 00:00:00 2001
From: Rachel  LEGENDRE <rachel.legendre@pasteur.fr>
Date: Tue, 11 Mar 2025 10:13:14 +0100
Subject: [PATCH] add virtualenv

---
 env.sh | 21 +++++++++++++++++----
 1 file changed, 17 insertions(+), 4 deletions(-)

diff --git a/env.sh b/env.sh
index 4926565..0c1bdcf 100644
--- a/env.sh
+++ b/env.sh
@@ -1,7 +1,7 @@
 #install conda via miniconda :
-follow this tuto : https://docs.conda.io/en/latest/miniconda.html#linux-installers
 
-#create your conda env
+follow this tuto : https://docs.conda.io/en/latest/miniconda.html#linux-installers
+##create your conda env
 conda create -n snakemake 
 conda activate snakemake
 conda config --add channels defaults
@@ -12,6 +12,19 @@ conda install -c bioconda snakemake
 conda install -c anaconda pandas
 conda install -c bioconda pysam
 conda install -c conda-forge singularity
-#mandatory for snakemake 8 only
+##mandatory for snakemake 8 only
 pip install snakemake-executor-plugin-slurm
-pip install snakemake-executor-plugin-cluster-generic
\ No newline at end of file
+pip install snakemake-executor-plugin-cluster-generic
+
+
+#install conda via virtulenv :
+module load Python/3.11.5 graalvm/ 
+virtualenv ~/snakemake
+source ~/snakemake/bin/activate
+pip install snakemake
+pip install pandas
+pip install pysam
+pip install snakemake-executor-plugin-slurm
+pip install snakemake-executor-plugin-cluster-generic
+
+
-- 
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