diff --git a/README.md b/README.md index 581a2c32ca3bc054f7bd91fe99d9d2d1f0463f57..f26383d980fc3fb7e739914878e6ded9663f3dd9 100644 --- a/README.md +++ b/README.md @@ -83,7 +83,7 @@ Execute the workflow locally via using $N cores or run it in a cluster environment via -`snakemake --use-singularity --singularity-args "-B '/home/login/'" --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} " -j 200 --nolock` +`snakemake --use-singularity --singularity-args "-B '$HOME'" --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} " -j 200 --nolock --cores $SLURM_JOB_CPUS_PER_NODE` Visualize how the rules are connected via