From c5b18e2ed925f933af1ed96553aaddc3fdf5e901 Mon Sep 17 00:00:00 2001
From: Rachel  LEGENDRE <rachel.legendre@pasteur.fr>
Date: Tue, 19 Oct 2021 15:08:27 +0200
Subject: [PATCH] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 581a2c3..f26383d 100644
--- a/README.md
+++ b/README.md
@@ -83,7 +83,7 @@ Execute the workflow locally via
 
 using $N cores or run it in a cluster environment via
 
-`snakemake --use-singularity --singularity-args "-B '/home/login/'" --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} " -j 200 --nolock`
+`snakemake --use-singularity --singularity-args "-B '$HOME'" --cluster-config config/cluster_config.json --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} " -j 200 --nolock --cores $SLURM_JOB_CPUS_PER_NODE`
 
 
 Visualize how the rules are connected via 
-- 
GitLab