diff --git a/README.md b/README.md index e6259e4d343501a1055a0af43cd536629edb4d9d..4ee0240b1bfa37de400e9b49f3100264cfd0953b 100644 --- a/README.md +++ b/README.md @@ -33,7 +33,7 @@ A tutorial to create a conda environment with all dependencies is available here Download the singularity container: -` singularity pull --arch amd64 library://rlegendre/default/chipflow:latest ` +` singularity pull --arch amd64 --name chipflow.img library://rlegendre/default/chipflow:latest ` ## Manual installation @@ -78,8 +78,8 @@ module load pysam * Download singularity container: ``` -singularity pull --arch amd64 library://rlegendre/default/chipflow:latest -mv chipflow_latest.sif chipflow/chipflow.img +cd chipflow +singularity pull --arch amd64 --name chipflow.img library://rlegendre/default/chipflow:latest ``` Then, you can configure the workflow. @@ -96,10 +96,7 @@ Then, you can configure the workflow. In any case, if you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this repository and, its DOI (see [above](https://gitlab.pasteur.fr/hub/chipflow#how-to-cite-chipflow-)) -If you are using Singularity, you need to copy the Singularity image in the cloned ChIPflow directory and rename it as "chipflow.img": - -`mv chipflow_latest.sif chipflow/chipflow.img` - +If you are using Singularity, you need to copy the Singularity image in the cloned ChIPflow directory. * Step 2: Configure workflow