Commits · 04d2122655a7614d95d0983966c0ce67d3dc62b9 · hub / ePeak

01 Apr, 2022 4 commits
- Merge branch 'dev' into 'master' · 04d21226
  Rachel LEGENDRE authored Apr 01, 2022
```
Merge new features to master branch

See merge request hub/chipflow!5
```
  04d21226
- Merge branch 'master' into 'dev' · 3ee37bc7
  Rachel LEGENDRE authored Apr 01, 2022
```
# Conflicts:
#   README.md
```
  3ee37bc7
- fix error in IA when nomodel · cb96e9b2
  Rachel LEGENDRE authored Apr 01, 2022
  
  cb96e9b2
- fix error in IA when nomodel · 732d6674
  Rachel LEGENDRE authored Apr 01, 2022
  
  732d6674
31 Mar, 2022 2 commits
- correct readme, add frip score · 8d2ddebf
  Rachel LEGENDRE authored Mar 31, 2022
  
  8d2ddebf
- correct readme, add frip score · 237471d9
  Rachel LEGENDRE authored Mar 31, 2022
  
  237471d9
29 Mar, 2022 2 commits
- maj pipeline image · 81cd0adc
  Rachel LEGENDRE authored Mar 29, 2022
  
  81cd0adc
- maj pipeline image · 8ae29f0c
  Rachel LEGENDRE authored Mar 29, 2022
  
  8ae29f0c
28 Mar, 2022 3 commits
- complete seacr recommendation · 79567d4d
  Rachel LEGENDRE authored Mar 28, 2022
  
  79567d4d
- complete seacr recommendation · f52888d1
  Rachel LEGENDRE authored Mar 28, 2022
  
  f52888d1
- add workflow image - correct some typo in chipflowR · 3e7e727d
  Rachel LEGENDRE authored Mar 28, 2022
  
  3e7e727d
23 Mar, 2022 2 commits
- add container · 9b82c3f2
  Rachel LEGENDRE authored Mar 23, 2022
  
  9b82c3f2
- fix errors · 78d2e55e
  Rachel LEGENDRE authored Mar 23, 2022
  
  78d2e55e
21 Mar, 2022 2 commits
- add rulegraph - add spike-in in bamcoverage - add do to dedup · 8dde433c
  Rachel LEGENDRE authored Mar 21, 2022
  
  8dde433c
- change IA/IDR output name for IGV session · b4fe9787
  Rachel LEGENDRE authored Mar 21, 2022
  
  b4fe9787
18 Mar, 2022 3 commits
- change name to chIPflow from ePeak · 347db374
  Rachel LEGENDRE authored Mar 18, 2022
  
  347db374
- change name to chIPflow from ePeak · dc2876ab
  Rachel LEGENDRE authored Mar 18, 2022
  
  dc2876ab
- change name · bad7aae7
  Rachel LEGENDRE authored Mar 18, 2022
  
  bad7aae7
17 Mar, 2022 4 commits
- add some modifications · 58eb4beb
  Rachel LEGENDRE authored Mar 17, 2022
  
  58eb4beb
- add scaling factor from spike-in to bedcov before seacr · 24dd19c4
  Rachel LEGENDRE authored Mar 17, 2022
  
  24dd19c4
- add fragment size metrics for paired data · 0412afdc
  Rachel LEGENDRE authored Mar 17, 2022
  
  0412afdc
- separate IA to IDR - change default input counting · 5f620a7b
  Rachel LEGENDRE authored Mar 17, 2022
  
  5f620a7b
03 Mar, 2022 1 commit
- update chipflowR · 3dca65fd
  Rachel LEGENDRE authored Mar 03, 2022
  
  3dca65fd
02 Mar, 2022 1 commit
- remove some parameters to union_peaks · 790c34d5
  Rachel LEGENDRE authored Mar 02, 2022
  
  790c34d5
01 Mar, 2022 1 commit
- connect seacr to IA and chipflowr · a7cb2a01
  Rachel LEGENDRE authored Mar 01, 2022
  
  a7cb2a01
25 Feb, 2022 4 commits
- Dedup bam as input to QC rules - remove pool for Seacr and from IA input · b322e38b
  Rachel LEGENDRE authored Feb 25, 2022
  
  b322e38b
- remove pool file in IA · 108cdca9
  Rachel LEGENDRE authored Feb 25, 2022
  
  108cdca9
- update · 6ec2a972
  Rachel LEGENDRE authored Feb 25, 2022
  
  6ec2a972
- remove useless rules · 799314b7
  Rachel LEGENDRE authored Feb 25, 2022
  
  799314b7
24 Feb, 2022 2 commits
- correction of Q&A about input used during peak calling · ac6cdf4e
  Rachel LEGENDRE authored Feb 24, 2022
  
  ac6cdf4e
- fix error in SPR, add seacr tips · a88a5a04
  Rachel LEGENDRE authored Feb 24, 2022
  
  a88a5a04
23 Feb, 2022 3 commits
- wrong help in config · 1467b8a9
  Rachel LEGENDRE authored Feb 23, 2022
  
  1467b8a9
- wrong help in config · 6b4693dc
  Rachel LEGENDRE authored Feb 23, 2022
  
  6b4693dc
- add seacr - correct some issues · 69eba826
  Rachel LEGENDRE authored Feb 23, 2022
  
  69eba826
18 Feb, 2022 1 commit
- add genomeCov and SEACR rules · 7bcd06cc
  Rachel LEGENDRE authored Feb 18, 2022
  
  7bcd06cc
17 Feb, 2022 1 commit
- add setting pipefail - add RAM to PPR - removing old files previous samtools · 36c48731
  Rachel LEGENDRE authored Feb 17, 2022
  
  36c48731
16 Feb, 2022 4 commits
- agree config file to new rules · abd1b85a
  Rachel LEGENDRE authored Feb 16, 2022
  
  abd1b85a
- agree config file to new rules · 29c873a5
  Rachel LEGENDRE authored Feb 16, 2022
  
  29c873a5
- add choice to deduplicate on IP only · 64fbe7a1
  Rachel LEGENDRE authored Feb 16, 2022
  
  64fbe7a1
- modify section design · f0a74d91
  Rachel LEGENDRE authored Feb 16, 2022
  
  f0a74d91