Commits · master · hub / ePeak

19 May, 2022 4 commits
- Merge branch 'dev' into 'master' · 9b580987
  Rachel LEGENDRE authored May 19, 2022
```
Dev to master

See merge request !6
```
  9b580987
- Merge branch 'master' into 'dev' · 8cf36710
  Rachel LEGENDRE authored May 19, 2022
```
# Conflicts:
#   Snakefile
```
  8cf36710
- add IA metrics issue #7 · 37493de5
  Rachel LEGENDRE authored May 19, 2022
  
  37493de5
- correct bedgraph rule - change some dirnames · 5971b3d2
  Rachel LEGENDRE authored May 19, 2022
  
  5971b3d2
11 May, 2022 1 commit
- fix issue when using batch effect in chipflowr_init.rules · 3ad41bd9
  Rachel LEGENDRE authored May 11, 2022
  
  3ad41bd9
03 May, 2022 1 commit
- mistyping in deseq2 method · 49a78ce0
  Rachel LEGENDRE authored May 03, 2022
  
  49a78ce0
29 Apr, 2022 1 commit
- include peaks from IDR in igv_session only if narrow mode is chosen · d82790d4
  Rachel LEGENDRE authored Apr 29, 2022
  
  d82790d4
28 Apr, 2022 1 commit
- add mouse and human common names to remove from filename · 5e495879
  Rachel LEGENDRE authored Apr 28, 2022
  
  5e495879
27 Apr, 2022 2 commits
- rename log of deduplicate · 3d38e067
  Rachel LEGENDRE authored Apr 27, 2022
  
  3d38e067
- change ignored dir · be08160a
  Rachel LEGENDRE authored Apr 27, 2022
  
  be08160a
25 Apr, 2022 1 commit
- run stat_peakcalling if macs2 or seacr are set to yes · fae657c5
  Rachel LEGENDRE authored Apr 25, 2022
  
  fae657c5
04 Apr, 2022 4 commits
- add control genome comments for CUT& data · e8e33bf7
  Rachel LEGENDRE authored Apr 04, 2022
  
  e8e33bf7
- add control genome comments for CUT& data · 60579024
  Rachel LEGENDRE authored Apr 04, 2022
  
  60579024
- add stderr log to macs2 - add spp file as input instead of params · f5be3025
  Rachel LEGENDRE authored Apr 04, 2022
  
  f5be3025
- add cut&run/tag in readme · 9e1eddaa
  Rachel LEGENDRE authored Apr 04, 2022
  
  9e1eddaa
01 Apr, 2022 4 commits
- Merge branch 'dev' into 'master' · 04d21226
  Rachel LEGENDRE authored Apr 01, 2022
```
Merge new features to master branch

See merge request hub/chipflow!5
```
  04d21226
- Merge branch 'master' into 'dev' · 3ee37bc7
  Rachel LEGENDRE authored Apr 01, 2022
```
# Conflicts:
#   README.md
```
  3ee37bc7
- fix error in IA when nomodel · cb96e9b2
  Rachel LEGENDRE authored Apr 01, 2022
  
  cb96e9b2
- fix error in IA when nomodel · 732d6674
  Rachel LEGENDRE authored Apr 01, 2022
  
  732d6674
31 Mar, 2022 2 commits
- correct readme, add frip score · 8d2ddebf
  Rachel LEGENDRE authored Mar 31, 2022
  
  8d2ddebf
- correct readme, add frip score · 237471d9
  Rachel LEGENDRE authored Mar 31, 2022
  
  237471d9
29 Mar, 2022 2 commits
- maj pipeline image · 81cd0adc
  Rachel LEGENDRE authored Mar 29, 2022
  
  81cd0adc
- maj pipeline image · 8ae29f0c
  Rachel LEGENDRE authored Mar 29, 2022
  
  8ae29f0c
28 Mar, 2022 3 commits
- complete seacr recommendation · 79567d4d
  Rachel LEGENDRE authored Mar 28, 2022
  
  79567d4d
- complete seacr recommendation · f52888d1
  Rachel LEGENDRE authored Mar 28, 2022
  
  f52888d1
- add workflow image - correct some typo in chipflowR · 3e7e727d
  Rachel LEGENDRE authored Mar 28, 2022
  
  3e7e727d
23 Mar, 2022 2 commits
- add container · 9b82c3f2
  Rachel LEGENDRE authored Mar 23, 2022
  
  9b82c3f2
- fix errors · 78d2e55e
  Rachel LEGENDRE authored Mar 23, 2022
  
  78d2e55e
21 Mar, 2022 2 commits
- add rulegraph - add spike-in in bamcoverage - add do to dedup · 8dde433c
  Rachel LEGENDRE authored Mar 21, 2022
  
  8dde433c
- change IA/IDR output name for IGV session · b4fe9787
  Rachel LEGENDRE authored Mar 21, 2022
  
  b4fe9787
18 Mar, 2022 3 commits
- change name to chIPflow from ePeak · 347db374
  Rachel LEGENDRE authored Mar 18, 2022
  
  347db374
- change name to chIPflow from ePeak · dc2876ab
  Rachel LEGENDRE authored Mar 18, 2022
  
  dc2876ab
- change name · bad7aae7
  Rachel LEGENDRE authored Mar 18, 2022
  
  bad7aae7
17 Mar, 2022 4 commits
- add some modifications · 58eb4beb
  Rachel LEGENDRE authored Mar 17, 2022
  
  58eb4beb
- add scaling factor from spike-in to bedcov before seacr · 24dd19c4
  Rachel LEGENDRE authored Mar 17, 2022
  
  24dd19c4
- add fragment size metrics for paired data · 0412afdc
  Rachel LEGENDRE authored Mar 17, 2022
  
  0412afdc
- separate IA to IDR - change default input counting · 5f620a7b
  Rachel LEGENDRE authored Mar 17, 2022
  
  5f620a7b
03 Mar, 2022 1 commit
- update chipflowR · 3dca65fd
  Rachel LEGENDRE authored Mar 03, 2022
  
  3dca65fd
02 Mar, 2022 1 commit
- remove some parameters to union_peaks · 790c34d5
  Rachel LEGENDRE authored Mar 02, 2022
  
  790c34d5
01 Mar, 2022 1 commit
- connect seacr to IA and chipflowr · a7cb2a01
  Rachel LEGENDRE authored Mar 01, 2022
  
  a7cb2a01