Commit 61cac6dd authored by Victoire  BAILLET's avatar Victoire BAILLET
Browse files

Update ATACflow.md

parent 1a717582
......@@ -100,7 +100,7 @@ fragment_size_distribution:
bamCoverage:
do: yes
options: "--outFileFormat bigwig --extendReads --binSize 1 --effectiveGenomeSize 2913022398 --normalizeUsing RPKM"
options: "--outFileFormat bigwig --binSize 10 --effectiveGenomeSize 2913022398 --normalizeUsing RPGC"
threads: 4
......@@ -129,8 +129,8 @@ macs2_peakcalling:
do : yes
cutoff: 0.01
genomeSize: mm
extsize : 100
options: ""
extsize : 200
options: "--shift -100 --keep-dup all"
```
......
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