diff --git a/Wednesday/ATACflow.md b/Wednesday/ATACflow.md index b59d85d65f4df691aee37f88e06c9d6fbb1013ab..690897b3f65f9bdf82fe73b7877145a5f4c04c6d 100644 --- a/Wednesday/ATACflow.md +++ b/Wednesday/ATACflow.md @@ -114,7 +114,7 @@ fragments_selection: bamCoverage: do: yes - options: "--outFileFormat bigwig --binSize 1 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC" + options: "--outFileFormat bigwig --binSize 10 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC" threads: 4 @@ -132,7 +132,7 @@ computeMatrix: - Note that `--no-model` is used by default in this pipeline. Add `--shift -100` to options. When --nomodel is set, MACS will use this value to move cutting ends (5') then apply --extsize from 5' to 3' direction to extend them to fragments. -- Adjust extsize to 200 +- Set extsize to 200 ```