From 62d9515f26e933f01ec6fa3b403affa5102bc03b Mon Sep 17 00:00:00 2001
From: Victoire BAILLET <victoire.baillet1@pasteur.fr>
Date: Wed, 11 May 2022 09:17:19 +0200
Subject: [PATCH] Update Wednesday/ATACflow.md
---
Wednesday/ATACflow.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/Wednesday/ATACflow.md b/Wednesday/ATACflow.md
index b59d85d..690897b 100644
--- a/Wednesday/ATACflow.md
+++ b/Wednesday/ATACflow.md
@@ -114,7 +114,7 @@ fragments_selection:
bamCoverage:
do: yes
- options: "--outFileFormat bigwig --binSize 1 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
+ options: "--outFileFormat bigwig --binSize 10 --effectiveGenomeSize 2652783500 --normalizeUsing RPGC"
threads: 4
@@ -132,7 +132,7 @@ computeMatrix:
- Note that `--no-model` is used by default in this pipeline. Add `--shift -100` to options. When --nomodel is set, MACS will use this value to move cutting ends (5') then apply --extsize from 5' to 3' direction to extend them to fragments.
-- Adjust extsize to 200
+- Set extsize to 200
```
--
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