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Update Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_scale_narrow.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_cyclicloess_narrow.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_cyclicloess_narrow_batch.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_scale_broad.html
Deleted Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_cyclicloess.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_cyclicloess_batch.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_scale.html

Update Thursday/Peak annotation/TP_peakAnnotation.md, Thursday/Peak annotation/TP_peakAnnotation.Rmd, Thursday/Peak annotation/H3K27ac_peaksBckg.fasta, Thursday/Peak annotation/H3K27ac_peaksQuery.fasta, Thursday/Peak annotation/Klf4_peaksBckg.fasta, Thursday/Peak annotation/Klf4_peaksQuery.fasta, Thursday/Peak annotation/Klf4_shCtrl_select.narrowPeak.closestGene.txt, Thursday/Peak annotation/TP_peakAnnotation.html, Thursday/Peak annotation/H3K27ac_shCtrl_select.narrowPeak.closestGene.txt, Thursday/Peak annotation/Klf4_shUbc9_select.narrowPeak.closestGene.txt, Thursday/Peak annotation/H3K27ac_shUbc9_select.narrowPeak.closestGene.txt, Thursday/Peak annotation/Klf4_shCtrl_select.narrowPeak, Thursday/Peak annotation/Klf4_shUbc9_select.narrowPeak, Thursday/Peak annotation/mm10_GENCODE_VM23_genesIDs.bed, Thursday/Peak annotation/H3K27ac_shCtrl_select.narrowPeak, Thursday/Peak annotation/H3K27ac_shUbc9_select.narrowPeak
Deleted Thursday/Peak Annotation/H3K27ac_peaksBckg.fasta, Thursday/Peak Annotation/H3K27ac_peaksQuery.fasta, Thursday/Peak Annotation/Klf4_peaksBckg.fasta, Thursday/Peak Annotation/Klf4_peaksQuery.fasta, Thursday/Peak Annotation/TP_peakAnnotation.Rmd, Thursday/Peak Annotation/TP_peakAnnotation.html

Update Thursday/Differential Analysis/chipflowR.md, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_cyclicloess.html, Thursday/Differential Analysis/H3K27ac_Stat_report_Limma_scale.html, Thursday/Differential Analysis/Klf4_Stat_report_Limma_cyclicloess.html

Update Thursday/Peak Annotation/TP_peakAnnotation.Rmd, Thursday/Peak Annotation/H3K27ac_peaksQuery.fasta, Thursday/Peak Annotation/Klf4_peaksQuery.fasta, Thursday/Peak Annotation/TP_peakAnnotation.html

Update Tuesday/MultiQC/multiqc_report.html, Tuesday/MultiQC/multiqc_data/deeptools_plot_fingerprint_counts.txt, Tuesday/MultiQC/multiqc_data/multiqc_bowtie2.txt, Tuesday/MultiQC/multiqc_data/multiqc_citations.txt, Tuesday/MultiQC/multiqc_data/multiqc_cutadapt.txt, Tuesday/MultiQC/multiqc_data/multiqc_fastqc.txt, Tuesday/MultiQC/multiqc_data/multiqc_general_stats.txt, Tuesday/MultiQC/multiqc_data/multiqc_macs2_narrow_Peaks_metrics-plot.txt, Tuesday/MultiQC/multiqc_data/multiqc_phantompeakqualtools.txt, Tuesday/MultiQC/multiqc_data/multiqc_picard_dups.txt, Tuesday/MultiQC/multiqc_data/multiqc_sources.txt, Tuesday/MultiQC/multiqc_data/multiqc_spikes_metrics.txt, Tuesday/MultiQC/multiqc_data/picard_histogram_1.txt, Tuesday/MultiQC/multiqc_data/picard_histogram_2.txt, Tuesday/MultiQC/multiqc_data/picard_histogram.txt, Tuesday/MultiQC/multiqc_data/multiqc.log, Tuesday/MultiQC/multiqc_data/multiqc_data.json, Tuesday/MultiQC/Spikes_metrics.out

Update Tuesday/Deeptools.md, Tuesday/deeptools_images/H3K27ac_shCtrl_Rep1_scale-genes.png, Tuesday/deeptools_images/H3K27ac_shUbc9_Rep1_scale-genes.png, Tuesday/deeptools_images/Klf4_shUbc9_Rep1_scale-genes.png, Tuesday/deeptools_images/Klf4_shCtrl_Rep1_scale-genes.png