diff --git a/Snakefile b/Snakefile index 498f0f108e07f6ebcdf05d3bfff2f258efa78e0a..abf04231c3d26bf7256a81ae35edfc7e14cc16ca 100755 --- a/Snakefile +++ b/Snakefile @@ -429,12 +429,12 @@ if config["bamCoverage"]["do"]: if config["bamCoverage"]["igv_session"]: igv_session_input = expand(bamCoverage_output, SAMPLE=samples, REF=ref, MAP=mapper) - igv_session_output = os.path.join(analysis_dir, "04-IGV/igv_session.xml") + igv_session_output = os.path.join(analysis_dir, "06-IGV/igv_session.xml") igv_session_genome = ref - igv_session_wdir = os.path.join(analysis_dir, "04-IGV/") + igv_session_wdir = os.path.join(analysis_dir, "06-IGV/") igv_session_autoScale = "True" igv_session_normalize = "False" - igv_session_log_out = os.path.join(analysis_dir, "04-IGV/logs/igv_session.out") + igv_session_log_out = os.path.join(analysis_dir, "06-IGV/logs/igv_session.out") final_output.extend([igv_session_output]) include: os.path.join(RULES, "igv_session.rules")