From 1b582d9699eadaf2590613c1b8ce934525f9817e Mon Sep 17 00:00:00 2001
From: rlegendre <rachel.legendre@pasteur.fr>
Date: Fri, 30 Dec 2022 15:20:02 +0100
Subject: [PATCH] change igv directory
---
Snakefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/Snakefile b/Snakefile
index 498f0f1..abf0423 100755
--- a/Snakefile
+++ b/Snakefile
@@ -429,12 +429,12 @@ if config["bamCoverage"]["do"]:
if config["bamCoverage"]["igv_session"]:
igv_session_input = expand(bamCoverage_output, SAMPLE=samples, REF=ref, MAP=mapper)
- igv_session_output = os.path.join(analysis_dir, "04-IGV/igv_session.xml")
+ igv_session_output = os.path.join(analysis_dir, "06-IGV/igv_session.xml")
igv_session_genome = ref
- igv_session_wdir = os.path.join(analysis_dir, "04-IGV/")
+ igv_session_wdir = os.path.join(analysis_dir, "06-IGV/")
igv_session_autoScale = "True"
igv_session_normalize = "False"
- igv_session_log_out = os.path.join(analysis_dir, "04-IGV/logs/igv_session.out")
+ igv_session_log_out = os.path.join(analysis_dir, "06-IGV/logs/igv_session.out")
final_output.extend([igv_session_output])
include: os.path.join(RULES, "igv_session.rules")
--
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