diff --git a/Snakefile b/Snakefile index 9a3899f2edc5773c5797f6e21ca38bd035d9f7e4..f3ec9a99261d6f59f6a5d20067673b80345ad0ab 100755 --- a/Snakefile +++ b/Snakefile @@ -222,7 +222,7 @@ if config["star_mapping"]["do"]: star_mapping_pass1_input = adapters_output star_mapping_pass1_done = star_index_output_done star_mapping_pass1_index = star_index_output_dir - star_mapping_pass1_logs = "02-Mapping/{REF}/STAR//logs/{SAMPLE}_{REF}_init.out" + star_mapping_pass1_logs = "02-Mapping/{REF}/STAR/logs/{SAMPLE}_{REF}_init.out" star_mapping_pass1_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_" star_mapping_pass1_junctions = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_SJ.out.tab" star_mapping_pass1_bam = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_Aligned.sortedByCoord.out.bam"