diff --git a/config/config.yaml b/config/config.yaml index 5a41caacebf0b177cfb998c1c977cfed09e3f2c3..cc168307a5c18145ab92c5f1743f02066270c065 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -147,7 +147,7 @@ bowtie2_mapping: star_mapping: do: yes - options: "--outFilterMismatchNoverLmax 0.05 --outSAMunmapped Within " + options: "--outFilterMismatchNoverLmax 0.05" pass2: "all-samples" threads: 4