From 63855a451a986ee0b374856c31f93ed327f396f3 Mon Sep 17 00:00:00 2001
From: Rachel LEGENDRE <rachel.legendre@pasteur.fr>
Date: Wed, 10 Jan 2024 15:54:30 +0100
Subject: [PATCH] cutadapt by default
---
config/config.yaml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/config/config.yaml b/config/config.yaml
index 622a852..8ab4cac 100755
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -122,7 +122,7 @@ fastq_screen:
adapters:
remove: yes
- tool: alienTrimmer # could be alienTrimmer or cutadapt
+ tool: cutadapt # could be alienTrimmer or cutadapt
cutadapt_file: file:config/TruSeq_Stranded_RNA.fa
alien_file: config/TruSeq_Stranded_RNA.fa
m: 25
--
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