From 65959f7e676f9dfa114620149d95fec5729d50a6 Mon Sep 17 00:00:00 2001
From: rlegendr <rachel.legendre@pasteur.fr>
Date: Fri, 17 Sep 2021 14:41:40 +0200
Subject: [PATCH] fixe maestro path
---
config/config.yaml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/config/config.yaml b/config/config.yaml
index 439a315..02693fd 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -159,7 +159,7 @@ pseudomapping:
do: yes
fasta: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38_cDNA.fa
gtf: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38.gtf
- options: "--single"
+ options: "--single -l 75 -s 15"
kmer: 31
threads: 12
@@ -194,7 +194,7 @@ feature_counts:
bamCoverage:
do: yes
- options: "--filterRNAstrand forward --effectiveGenomeSize 2913022398 --normalizeUsing RPKM"
+ options: "--filterRNAstrand forward --effectiveGenomeSize 2913022398 "
threads: 4
@@ -209,4 +209,4 @@ bamCoverage:
multiqc:
- options: " -f -x 02-Mapping/*/*_init_*"
+ options: " -f -x 02-Mapping/*/*/*_init_* -x .snakemake"
--
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