From 75147417fd32d504cfd16309b63b4b3e8bc9a14c Mon Sep 17 00:00:00 2001
From: Rachel LEGENDRE <rachel.legendre@pasteur.fr>
Date: Wed, 26 Jul 2023 10:29:07 +0200
Subject: [PATCH] Update fastqc.rules
---
workflow/rules/fastqc.rules | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rules/fastqc.rules b/workflow/rules/fastqc.rules
index af535eb..4190770 100755
--- a/workflow/rules/fastqc.rules
+++ b/workflow/rules/fastqc.rules
@@ -37,7 +37,7 @@ rule fastqc:
log:
fastqc = fastqc_log
envmodules:
- "graalvm/ce-java19-22.3.1",
+ "graalvm/ce-java19-22.3.1sssssssssssssssssssssssssssssssssssssssssssssssssssss",
"fastqc"
shell:
"fastqc -t {threads} --outdir {params.wkdir} -f fastq {input.fastq} {params.kargs} > {log.fastqc}"
--
GitLab