From 9514876eb167111c0ea549d9aeba69e16a52faa1 Mon Sep 17 00:00:00 2001 From: Rachel LEGENDRE <rachel.legendre@pasteur.fr> Date: Wed, 10 Nov 2021 11:45:21 +0100 Subject: [PATCH] remove double / in path --- Snakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Snakefile b/Snakefile index f3ec9a9..daa0e34 100755 --- a/Snakefile +++ b/Snakefile @@ -234,7 +234,7 @@ if config["star_mapping"]["do"]: star_mapping_pass2_input = adapters_output star_mapping_pass2_done = star_index_output_done star_mapping_pass2_index = star_index_output_dir - star_mapping_pass2_logs = "02-Mapping/{REF}/STAR//logs/{SAMPLE}_{REF}.out" + star_mapping_pass2_logs = "02-Mapping/{REF}/STAR/logs/{SAMPLE}_{REF}.out" star_mapping_pass2_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_" star_mapping_pass2_junctions = expand("02-Mapping/{{REF}}/STAR/{SAMPLE}_{{REF}}_init_SJ.out.tab", SAMPLE=samples) star_mapping_pass2_bam = star_mapping_pass1_bam -- GitLab