From ce84c726d955b78a65f9ea6222b6d333fff7f191 Mon Sep 17 00:00:00 2001
From: Rachel LEGENDRE <rachel.legendre@pasteur.fr>
Date: Thu, 10 Feb 2022 14:14:30 +0100
Subject: [PATCH] Update Snakefile
---
Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snakefile b/Snakefile
index a2c0133..22d1aba 100755
--- a/Snakefile
+++ b/Snakefile
@@ -41,7 +41,7 @@ RULES = os.path.join("workflow", "rules")
#-------------------------------------------------------
# list of all files in the directory 'input_dir'
-filenames = [f for f in glob.glob(config["input_dir"]+"*") if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)]
+filenames = [f for f in glob.glob(config["input_dir"]+"/*") if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)]
if not filenames :
raise ValueError("Please provides input fastq files")
--
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