diff --git a/Snakefile b/Snakefile
index fca50250c19a7a757691876c6385fd8d68ed77cd..a7c30185ef7a131bb6336b55c5eae68cfc37531c 100755
--- a/Snakefile
+++ b/Snakefile
@@ -212,8 +212,8 @@ if config["star_mapping"]["do"]:
     star_index_fasta = unpack(mapping_index)
     star_mapping_splice_file = unpack(annot_index)
     star_index_log = "02-Mapping/STAR/logs/STAR_{REF}_indexing.log"
-    star_index_output_done = config["genome"]["genome_directory"]+"{REF}/STAR/{REF}.1.bt2"
-    star_index_output_dir = config["genome"]["genome_directory"]+"{REF}/STAR/{REF}" 
+    star_index_output_done = config["genome"]["genome_directory"]+"{REF}/STAR/SAindex"
+    star_index_output_dir = config["genome"]["genome_directory"]+"{REF}/STAR/" 
  
     include: os.path.join(RULES, "star_index.rules")