From d44ab73ec90d6aff51c56eaa4032e2b2260b53a6 Mon Sep 17 00:00:00 2001
From: rlegendr <rachel.legendre@pasteur.fr>
Date: Thu, 16 Sep 2021 16:22:27 +0200
Subject: [PATCH] fixe issue with star index
---
Snakefile | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/Snakefile b/Snakefile
index fca5025..a7c3018 100755
--- a/Snakefile
+++ b/Snakefile
@@ -212,8 +212,8 @@ if config["star_mapping"]["do"]:
star_index_fasta = unpack(mapping_index)
star_mapping_splice_file = unpack(annot_index)
star_index_log = "02-Mapping/STAR/logs/STAR_{REF}_indexing.log"
- star_index_output_done = config["genome"]["genome_directory"]+"{REF}/STAR/{REF}.1.bt2"
- star_index_output_dir = config["genome"]["genome_directory"]+"{REF}/STAR/{REF}"
+ star_index_output_done = config["genome"]["genome_directory"]+"{REF}/STAR/SAindex"
+ star_index_output_dir = config["genome"]["genome_directory"]+"{REF}/STAR/"
include: os.path.join(RULES, "star_index.rules")
--
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