From dc3938fce779dde27a9218c6b0c3c516c5a65512 Mon Sep 17 00:00:00 2001 From: Rachel LEGENDRE <rachel.legendre@pasteur.fr> Date: Wed, 9 Feb 2022 17:05:34 +0100 Subject: [PATCH] using glob instead of os.listdir --- Snakefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Snakefile b/Snakefile index 8843c47..a2c0133 100755 --- a/Snakefile +++ b/Snakefile @@ -41,7 +41,7 @@ RULES = os.path.join("workflow", "rules") #------------------------------------------------------- # list of all files in the directory 'input_dir' -filenames = [f for f in glob.glob(config["input_dir"]) if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)] +filenames = [f for f in glob.glob(config["input_dir"]+"*") if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)] if not filenames : raise ValueError("Please provides input fastq files") -- GitLab