diff --git a/config/config.yaml b/config/config.yaml index 6140d4988596a6c2293e96a623ca610817fc7a2a..a3db8b99d7cd18895fbde9b419900ea44062283b 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -108,7 +108,7 @@ adapters: cutadapt_file: file:config/TruSeq_Stranded_RNA.fa alien_file: config/TruSeq_Stranded_RNA.fa m: 25 - mode: a + mode: b options: -O 6 --trim-n --max-n 1 # for cutadapt #options: -k 10 -m 5 -p 80 # for alienTrimmer quality: 30 @@ -144,7 +144,7 @@ bowtie2_mapping: star_mapping: do: yes # for small genome, STAR may abort with segmentation fault. Setting sjdb Over hang to 250 skips this issue - options: "--outFilterMismatchNoverLmax 0.05 --outSAMunmapped Within --sjdbOverhang 250" + options: "--outSAMunmapped None " threads: 4