diff --git a/runme.sh b/runme.sh index c6b3ff6430319459788eaf13f834c3c6bb8e9f12..099b64107b901bdd3339b289598c6dd2c5b05140 100644 --- a/runme.sh +++ b/runme.sh @@ -35,3 +35,8 @@ conda activate snakemake snakemake --use-envmodules -n #run the pipeline sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock + + +#re-run the pipeline at specific step +sbatch -q hubbioit -p hubbioit snakemake --cluster-config config/cluster_config.json --use-envmodules --cluster "sbatch --mem={cluster.ram} --cpus-per-task={threads} -q hubbioit -p hubbioit" -j 300 --nolock --forcerun multiqc +