diff --git a/config/config.yaml b/config/config.yaml index 06d7a3339d29c9546f90106bc06a7ecd2c9c7476..68a81ff277ef29585b323c5193b3fc011d9cebc4 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -34,7 +34,7 @@ input_extension: '.fastq.gz' # directory where you want (not yet fonctional sorry) analysis_dir: . # tmpdir: write tempory file on this directory (default /tmp/, but could be "/pasteur/sonic/scratch/users/LOGIN/") -tmpdir: "/pasteur/sonic/scratch/public/" +tmpdir: $MYSCRATCH #===============================================================================