Commits · master · hub / RNAflow

18 May, 2022 1 commit
- Update README.md · 26fdf970
  Rachel LEGENDRE authored May 18, 2022
  
  26fdf970
30 Mar, 2022 2 commits
- Update README.md · d24711e5
  Rachel LEGENDRE authored Mar 30, 2022
  
  d24711e5
- add rulegraph · cddcc0e5
  Rachel LEGENDRE authored Mar 30, 2022
  
  cddcc0e5
25 Mar, 2022 1 commit
- remove output to multiqc for rules with temp output · 3423af7f
  Rachel LEGENDRE authored Mar 25, 2022
  
  3423af7f
11 Feb, 2022 2 commits
- update contributors · f4243df7
  Rachel LEGENDRE authored Feb 11, 2022
  
  f4243df7
- add contributors · b28122d2
  Rachel LEGENDRE authored Feb 11, 2022
  
  b28122d2
10 Feb, 2022 2 commits
- remove glob to find fastq · ace8d352
  Rachel LEGENDRE authored Feb 10, 2022
  
  ace8d352
- Update Snakefile · ce84c726
  Rachel LEGENDRE authored Feb 10, 2022
  
  ce84c726
09 Feb, 2022 3 commits
- using glob instead of os.listdir · dc3938fc
  Rachel LEGENDRE authored Feb 09, 2022
  
  dc3938fc
- Update config.yaml · 43daea49
  Rachel LEGENDRE authored Feb 09, 2022
  
  43daea49
- Update Snakefile · 0a3aac85
  Rachel LEGENDRE authored Feb 09, 2022
  
  0a3aac85
03 Feb, 2022 3 commits
- Update runme.sh · 6a48dd58
  Rachel LEGENDRE authored Feb 03, 2022
  
  6a48dd58
- Merge branch 'vibaille-master-patch-14605' into 'master' · 44085748
  Rachel LEGENDRE authored Feb 03, 2022
```
add mark duplicates

See merge request !31
```
  44085748
- add mark duplicates · c165a791
  Victoire BAILLET authored Feb 03, 2022
  
  c165a791
14 Jan, 2022 3 commits
- Update MarkDuplicates default values · 86ea1bd6
  Rachel LEGENDRE authored Jan 14, 2022
  
  86ea1bd6
- add markDuplicate in workflow #37 · 57189cc5
  Rachel LEGENDRE authored Jan 14, 2022
  
  57189cc5
- add markDuplicate in workflow · 3944616b
  Rachel LEGENDRE authored Jan 14, 2022
  
  3944616b
13 Jan, 2022 1 commit
- change defaults + tmp dir after maestro update · 9af8df89
  Rachel LEGENDRE authored Jan 13, 2022
  
  9af8df89
05 Jan, 2022 1 commit
- Update config.yaml · f38a8258
  Rachel LEGENDRE authored Jan 05, 2022
  
  f38a8258
29 Dec, 2021 2 commits
- Update TruSeq_Stranded_RNA.fa · 852ebeed
  Rachel LEGENDRE authored Dec 29, 2021
  
  852ebeed
- add some primers · 6ddd486a
  Rachel LEGENDRE authored Dec 29, 2021
  
  6ddd486a
22 Dec, 2021 2 commits
- get good log output for multiQC · 87d0a723
  Rachel LEGENDRE authored Dec 22, 2021
  
  87d0a723
- fix IndexError when SE data · 5c425553
  Rachel LEGENDRE authored Dec 22, 2021
  
  5c425553
20 Dec, 2021 12 commits
- Merge branch 'master' of gitlab.pasteur.fr:hub/rnaflow · 4c095324
  Rachel LEGENDRE authored Dec 20, 2021
  
  4c095324
- fix #34 by updating sortmeRNA version and rule · 67d1c22c
  Rachel LEGENDRE authored Dec 20, 2021
  
  67d1c22c
- bash error when star (pass2) input is fastq.gz · 8fa41805
  Rachel LEGENDRE authored Dec 20, 2021
  
  8fa41805
- bash error when star input is fastq.gz · 305e929b
  Rachel LEGENDRE authored Dec 20, 2021
  
  305e929b
- Update release.md · 89408590
  Rachel LEGENDRE authored Dec 20, 2021
  
  89408590
- Update release.md · 62b839fb
  Rachel LEGENDRE authored Dec 20, 2021
  
  62b839fb
- Merge branch 'master' of gitlab.pasteur.fr:hub/rnaflow · 88a41bf5
  Rachel LEGENDRE authored Dec 20, 2021
  
  88a41bf5
- fix error with none option of pass2 · 413d2cc2
  Rachel LEGENDRE authored Dec 20, 2021
  
  413d2cc2
- tracking of updates for releases · 3a368b09
  Rachel LEGENDRE authored Dec 20, 2021
  
  3a368b09
- Update Snakefile · 1ecac67b
  Rachel LEGENDRE authored Dec 20, 2021
  
  1ecac67b
- fix issue #35 adding new STAR option · 338dccfc
  Rachel LEGENDRE authored Dec 20, 2021
  
  338dccfc
- adapt sortmerna rule to new version · 00207f57
  Rachel LEGENDRE authored Dec 20, 2021
  
  00207f57
18 Nov, 2021 1 commit
- Update config.yaml · e93fedb1
  Rachel LEGENDRE authored Nov 18, 2021
  
  e93fedb1
10 Nov, 2021 4 commits
- fix error with PE when checking of extension in STAR rules · c46f434f
  Rachel LEGENDRE authored Nov 10, 2021
  
  c46f434f
- Update cluster_config.json · d8768691
  Rachel LEGENDRE authored Nov 10, 2021
  
  d8768691
- use absolute path to avoid error with AlienTrimmer · cabea585
  Rachel LEGENDRE authored Nov 10, 2021
  
  cabea585
- remove double / in path · 9514876e
  Rachel LEGENDRE authored Nov 10, 2021
  
  9514876e