Skip to content
GitLab
Projects Groups Snippets
  • /
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
  • RNAflow RNAflow
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 3
    • Issues 3
    • List
    • Boards
    • Service Desk
    • Milestones
  • Merge requests 0
    • Merge requests 0
  • CI/CD
    • CI/CD
    • Pipelines
    • Jobs
    • Schedules
  • Deployments
    • Deployments
    • Environments
    • Releases
  • Packages and registries
    • Packages and registries
    • Package Registry
    • Container Registry
    • Infrastructure Registry
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • CI/CD
    • Repository
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Jobs
  • Commits
  • Issue Boards
Collapse sidebar
  • hub
  • RNAflowRNAflow
  • Issues
  • #35
Closed
Open
Issue created Nov 17, 2021 by Rachel LEGENDRE@rlegendrOwner

Memory error with second pass of STAR when large set of data

Provide an option in the config file to do second pass from junctions of all samples OR from junctions of current sample

star_mapping:
    do: yes
    options: "--outFilterMismatchNoverLmax 0.05 --outSAMunmapped Without"
    pass2: "by-sample", "all-samples", "none"
    threads: 4
Edited Nov 17, 2021 by Rachel LEGENDRE
Assignee
Assign to
Time tracking