From 1466aeb362233f0aca23ea762057ef4ee9dc48bc Mon Sep 17 00:00:00 2001 From: Elodie CHAPEAUBLANC <elodie.chapeaublanc@pasteur.fr> Date: Tue, 18 Apr 2023 09:33:31 +0200 Subject: [PATCH] Update install_r_packages.R --- scripts/install_r_packages.R | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/scripts/install_r_packages.R b/scripts/install_r_packages.R index 40a94b7..32a9cc5 100644 --- a/scripts/install_r_packages.R +++ b/scripts/install_r_packages.R @@ -4,7 +4,8 @@ ### Date : 17/04/2023 ### Aim : Install all packages from CRAN, BioConductor or github, requiered in the Shiny app. - +### Install pak packages first +install.packages(c("pak","pkgcache","pkgdepends"), dependencies= NA) #### Load file with the list of packages packages_list <- read.csv(file = "/opt/scripts/packages_to_install.csv", header = FALSE, sep = ";", stringsAsFactors = FALSE) ### Install packages with dependencies with pak packages -- GitLab