From fd51407dbb772931760b2855a6f57789ab749d84 Mon Sep 17 00:00:00 2001
From: Elodie Chapeaublanc <elodie.chapeaublanc@pasteur.fr>
Date: Mon, 24 Jun 2024 16:47:07 +0200
Subject: [PATCH] modification in install_r_packages.R
---
scripts/install_r_packages.R | 15 +++++----------
1 file changed, 5 insertions(+), 10 deletions(-)
diff --git a/scripts/install_r_packages.R b/scripts/install_r_packages.R
index 0a0b262..b7c4659 100644
--- a/scripts/install_r_packages.R
+++ b/scripts/install_r_packages.R
@@ -24,16 +24,11 @@ print("Installation for other packages needed : ")
print(paste(packages_list$Package_name, sep = "",collapse = ","))
### Install packages with dependencies with pak packages
-if (length(packages_list$Package_name)>=5){
- print ("at least 5 packages to install")
- for(i in 1:length(packages_list$Package_name) ) {
- print(packages_list$Package_name[i])
- pak::pkg_install(pkg=packages_list$Package_name[i])
- }
-}else {
- print("packages to install : ")
- print(paste(packages_list$Package_name, sep = "",collapse = ","))
- pak::pkg_install(pkg=packages_list$Package_name)
+for (i in 1:length(packages_list$Package_name)) {
+ print("Installation of: ")
+ print(packages_list$Package_name[i])
+ pak::pkg_install(pkg = packages_list$Package_name[i])
+ print("Installation done!!")
}
# clean the cache of pak
pak::cache_clean()
--
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