Commit 03f0b599 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

update version for cwltool after merged PR for singularity

parent 775bf846
......@@ -44,7 +44,6 @@ is expected at the end of the image name._
## Setting up virtual environment for Toil
### Initialize your virtual environment
To set up and environment for Toil on Tars, follow the the following instructions:
......@@ -84,7 +83,7 @@ So we need to pull `Toil` repository and modify the `setup.py` prior to manual i
Since we want specific versions of `cwltool` and `cwl-utils` for the moment, we refer to github repository directly:
```bash
(your-toil-venv)$ pip install --upgrade -e git+https://github.com/drkennetz/cwltool.git@singularity23_fix#egg=cwltool # This will change soon
(your-toil-venv)$ pip install --upgrade cwltool==1.0.20190603140227
(your-toil-venv)$ pip install -e git+https://github.com/khillion/cwl-utils.git#egg=cwl_utils # This need to change to to be more stable
```
......
......@@ -7,7 +7,7 @@ CacheControl==0.11.7
certifi==2019.3.9
chardet==3.0.4
-e git+https://github.com/khillion/cwl-utils.git@f7a2fc68d2be6108f6f31dbe4cf4b8ebc949bac7#egg=cwl_utils
-e git+https://github.com/drkennetz/cwltool.git@309919e593380c5c331c50b655d024a5400a7d2f#egg=cwltool
cwltool==1.0.20190603140227
decorator==4.4.0
dill==0.2.7.1
docker==2.5.1
......
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