Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
hub
tars-cwl-runner
Commits
54f34562
Commit
54f34562
authored
May 28, 2019
by
Kenzo-Hugo Hillion
♻
Browse files
add instruction for venv setup on TARS
parent
6c9b6b1f
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
54f34562
Scripts and instructions to run CWL on TARS
\ No newline at end of file
# Scripts and instructions to run CWL on TARS
## Usage
---------
# Maintenance and Development
## Setting up virtual environment for Toil
28/05/2019: _The following instruction will change when different PR will be merged to the main repositories_
To set up and environment for Toil on Tars, follow the the following instructions:
```
bash
module load Python/3.7.2
python3
-m
venv your-toil-venv
source
your-toil-venv/bin/activate
(
your-toil-venv
)
$
pip
install
toil
(
your-toil-venv
)
$
pip
install
git+https://github.com/drkennetz/cwltool.git@singularity23_fix
# This will change soon
(
your-toil-venv
)
$
pip
install
git+https://github.com/khillion/cwl-utils.git
# This need to change to to be more stable
```
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment