Commit 54f34562 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

add instruction for venv setup on TARS

parent 6c9b6b1f
Scripts and instructions to run CWL on TARS
\ No newline at end of file
# Scripts and instructions to run CWL on TARS
## Usage
---------
# Maintenance and Development
## Setting up virtual environment for Toil
28/05/2019: _The following instruction will change when different PR will be merged to the main repositories_
To set up and environment for Toil on Tars, follow the the following instructions:
```bash
module load Python/3.7.2
python3 -m venv your-toil-venv
source your-toil-venv/bin/activate
(your-toil-venv)$ pip install toil
(your-toil-venv)$ pip install git+https://github.com/drkennetz/cwltool.git@singularity23_fix # This will change soon
(your-toil-venv)$ pip install git+https://github.com/khillion/cwl-utils.git # This need to change to to be more stable
```
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment