run toil with singularity option

84a8d4b6 · Hervé MENAGER · 7619545b · 84a8d4b6
Commit 84a8d4b6 authored May 29, 2019 by Hervé MENAGER
--- a/tars-cwl-runner.sh
+++ b/tars-cwl-runner.sh
@@ -16,4 +16,4 @@ docker_extract.py -s ${singularity_imgs_path} $1

 # Run toil
 # export TOIL_SLURM_ARGS=""  # Need to be set by parameters later
-toil-cwl-runner "$@"
+toil-cwl-runner --singularity "$@"