Commit b541e0f4 authored by Kenzo-Hugo Hillion's avatar Kenzo-Hugo Hillion
Browse files

start tars-cwl-runner.sh script

parent 74bd744f
#!/bin/sh
toil_venv=/pasteur/projets/policy01/BioIT/Toil/tars-cwl-runner
singularity_imgs_path=/pasteur/projets/policy01/BioIT/Toil/.singularity_imgs/
# Go into the right environment
module load Python/3.7.2
source ${toil_venv}/source/activate
export SINGULARITY_PULLFOLDER=${singularity_imgs_path}
# Prefetch every docker images and built them for singularity
docker_extract.py ${singularity_imgs_path} $1
# Run toil
toil-cwl-runner "$@"
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