BuildContactTable.m

%% Harvest various statistics on contacts and calcium pulses.


%% Clean & load.

clc
clear 
close all

dt = 10. / 60.; % min, frame interval.
longContactThreshold = 60; % x10s = 10 min.

rootFolder = '/Users/tinevez/Google Drive/Projects/Contacts/MATLAB files/correlation/';
sourceFiles = {
    % SiC - SAg
    'A1.mat'
    'A2.mat'
    'A3.mat'
    'A4.mat'
    % SiC + SAg
    'B1.mat'
    'B2.mat'
    'B4.mat'
    'B5.mat'
    % NE - SAg
    'C1.mat'
    'C2.mat'
    % NE + SAg
    'D1.mat'
    'D2.mat'
    'D3.mat'
    'D4.mat'
    % SiT - SAg
    'E1.mat'
    'E2.mat'
    'E3.mat'
    % SiT + SAg
    'F1.mat'
    'F2.mat'
    'F3.mat'
    'F4.mat'
    % All SiC - SAg
    'allA.mat'
    % All SiC + SAg
    'allB.mat'
    % All NE - SAg
    'allC.mat'
    % All NE + SAg
    'allD.mat'
    % All SiT - SAg
    'allE.mat'
    % All SiT + SAg
    'allF.mat'
    };
treatments = categorical( {
    %
    'SiC'
    'SiC'
    'SiC'
    'SiC'
    %
    'SiC'
    'SiC'
    'SiC'
    'SiC'
    %
    'NE'
    'NE'
    %
    'NE'