From 079601d262272a839101fbf50656327c70dbaf58 Mon Sep 17 00:00:00 2001
From: Jean-Yves TINEVEZ <jean-yves.tinevez@pasteur.fr>
Date: Mon, 27 Jul 2020 09:27:12 +0200
Subject: [PATCH] plot_values_junction: plot the tissue using the junction
graph.
---
src/@deproj/deproj.m | 8 ++++++--
src/@deproj/plot_values_junction.m | 18 ++++++++++++++++++
2 files changed, 24 insertions(+), 2 deletions(-)
create mode 100644 src/@deproj/plot_values_junction.m
diff --git a/src/@deproj/deproj.m b/src/@deproj/deproj.m
index 5207220..87e451e 100644
--- a/src/@deproj/deproj.m
+++ b/src/@deproj/deproj.m
@@ -28,8 +28,8 @@ classdef deproj
%% Conversion between MATLAB objects.
- % Returns the faces and vertices of a deproj collection.
- [ V, F ] = to_vertices_and_faces( obj )
+ % Returns the faces and vertices of the junction graph of a instance.
+ [ V, F ] = graph_to_VF( obj )
% Returns the cells boundary polygons as 3 matrices padded by NaNs.
[ X, Y, Z ] = to_matrices( obj )
@@ -65,6 +65,10 @@ classdef deproj
% Plot the tissue with cells as ellipses, colored by the specified values.
hts = plot_values_ellipse( obj, values, ax )
+
+ % Plot the tissue with the cell contour approximated by the junctions, colored by the specified values.
+ hts = plot_values_junction( obj, values, ax )
+
end
diff --git a/src/@deproj/plot_values_junction.m b/src/@deproj/plot_values_junction.m
new file mode 100644
index 0000000..1423d83
--- /dev/null
+++ b/src/@deproj/plot_values_junction.m
@@ -0,0 +1,18 @@
+function hts = plot_values_junction( obj, values, ax )
+%PLOT_VALUES_JUNCTION Plot the tissue with the cell contour approximated by the junctions, colored by the specified values.
+
+ [ V, F ] = obj.graph_to_VF();
+
+ n_objects = numel( obj.epicells );
+ if n_objects > 1000, lw = 1; else, lw = 2; end
+
+ hts = patch( ...
+ 'Faces', F, ...
+ 'Vertices', V, ...
+ 'FaceVertexCData', values, ...
+ 'FaceColor', 'flat', ...
+ 'LineWidth', lw, ...
+ 'Parent', ax );
+
+end
+
--
GitLab