Commit 2a7b0d25 authored by Jean-Yves TINEVEZ's avatar Jean-Yves TINEVEZ
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Update TOC.

parent f492e885
......@@ -6,21 +6,32 @@ But the really important methods are those who create a `deproj` analysis result
**Table of Contents**
* [DeProj methods.](#deproj-methods)
* [The deproj class methods.](#the-deproj-class-methods)
* [Main deproj methods.](#main-deproj-methods)
* [Static method from_heightmap](#static-method-from_heightmap)
* [The import.](#the-import)
* [The segmentation mask image I.](#the-segmentation-mask-image-i)
* [The height-map H.](#the-height-map-h)
* [Example.](#example)
* [Static method from_bellaiche](#static-method-from_bellaiche)
* [The segmentation from the software of Y.B. lab.](#the-segmentation-from-the-software-of-yb-lab)
* [The mesh mapping the tissue surface.](#the-mesh-mapping-the-tissue-surface)
* [The import.](#the-import-1)
* [to_table](#to_table)
* [to_file](#to_file)
* [plot_sizes](#plot_sizes)
* [plot_fit_plane](#plot_fit_plane)
* [plot_fit_ellipse](#plot_fit_ellipse)
* [plot_curvatures](#plot_curvatures)
* [plot_distorsions](#plot_distorsions)
* [add_plot_id](#add_plot_id)
* [figure_cell_sizes](#figure_cell_sizes)
* [figure_tissue_orientation](#figure_tissue_orientation)
* [figure_cell_elongation](#figure_cell_elongation)
* [figure_curvatures](#figure_curvatures)
* [figure_distorsions](#figure_distorsions)
* [add_plot_ids](#add_plot_ids)
* [Secondary deproj methods.](#secondary-deproj-methods)
* [add_plot_variable](#add_plot_variable)
* [add_ellipse_variable](#add_ellipse_variable)
* [plot_values_contour](#plot_values_contour)
* [plot_values_ellipse](#plot_values_ellipse)
* [plot_values_junction](#plot_values_junction)
* [plot_text](#plot_text)
* [Static method cmap_seismic](#static-method-cmap_seismic)
* [Static method compute_curvatures](#static-method-compute_curvatures)
* [The epicell class methods.](#the-epicell-class-methods)
......@@ -39,6 +50,7 @@ But the really important methods are those who create a `deproj` analysis result
* [Static method fit_ellipse_3d](#static-method-fit_ellipse_3d)
## The `deproj` class methods.
A `deproj` instance has several interesting methods, that let you export and display the analysis results. In particular the plotting routines: you will most likely be adapting them to your needs with a bit of MATLAB.
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