- 31 Jul, 2020 3 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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- 27 Jul, 2020 10 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
I tried to group all the texts in one single graphic object, but it does not work. 'text' create one text object per position whatever you do. So the text plotting routines are still slow.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
Courtesy of N. Dray, L. Bally-Cuif lab.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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- 26 Jul, 2020 11 commits
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Jean-Yves TINEVEZ authored
We plot all ellipses as single patch, but this time we color the vertices. A bit different, but still very instructive. It also turns out it works very well. Also simplifies and shortens the code.
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Jean-Yves TINEVEZ authored
We now plot the cell many contours as a single patch object relying on the special low-level syntax of patch.
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Jean-Yves TINEVEZ authored
We want to trim the fat.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
The goal is to be able to plot the tissue with one face per cell, to have a simplified representation of the cells on the tissue with e.g.: >> patch( 'Faces', F, 'Vertices', V, 'FaceColor', 'g' )
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
Brute force, thanks to the power of linear scattered interpolant.
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Jean-Yves TINEVEZ authored
We need to check that an argument is not empty before checking whether it is nan.
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Jean-Yves TINEVEZ authored
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- 24 Jul, 2020 10 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
The original mesh file coming from MorphoGraphX had dozens of millions of vertices and faces and was not aligned with the segmentation data. So I downloaded MeshLab and simplified and recentered the mesh.
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Jean-Yves TINEVEZ authored
WARNING: This is a simplistic reader that can only handle one kind of data formatting. The file must be a binary encoded following the binary_little_endian format, there must be 3 floats per vertex, and 3 integer per face, nothing else. Any variation will result in a crash at best. Everything else I could find was super slow.
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Jean-Yves TINEVEZ authored
Extra speedup factor of 2.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
One call to pdist per run. Speed-up ~ x8.
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Jean-Yves TINEVEZ authored
That can connect unordered points on a non-convex polygon, provided that connected points are close.
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Jean-Yves TINEVEZ authored
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- 23 Jul, 2020 2 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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- 22 Jul, 2020 4 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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