- 03 Jul, 2020 1 commit
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Jean-Yves TINEVEZ authored
and back.
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- 02 Jul, 2020 1 commit
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Jean-Yves TINEVEZ authored
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- 30 Jun, 2020 9 commits
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Jean-Yves TINEVEZ authored
Like S. Herbert did.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
Now we work more like a class with methods.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
Small enough to be committed. Images by Leo Valon, Institut Pasteur, Levayer lab.
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Jean-Yves TINEVEZ authored
- We smooth the height-map by a scale automatically determined by object scales -> avoid jagged edges. - We prune effectively regions where Z = 0. - Compute and display de-project area.
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Jean-Yves TINEVEZ authored
- Directly permute X & Y to have boundary coordinates in the proper referential, like junctions. - Reduce the number of vertices in the polygon, using reducepoly. With this setting (0.005) reducepoly is very conservative, but effectively decimate useless vertices. This has a positive impact on the area calculation (fewer, larger triangles), and on all performance.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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- 29 Jun, 2020 4 commits
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Jean-Yves TINEVEZ authored
Computing a mesh for the height-map is difficult and takes forever as soon as we have images of a sgnificant size. Here we will simply use the height map to assign a Z value to all location on request. And see whether this still works.
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
Follow grosso-modo a maven repo.
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Jean-Yves TINEVEZ authored
Douglas Schwarz (2020). uipickfiles: uigetfile on steroids (https://www.mathworks.com/matlabcentral/fileexchange/ 10867-uipickfiles-uigetfile-on-steroids), MATLAB Central File Exchange. Retrieved June 29, 2020.
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- 04 Feb, 2020 1 commit
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Jean-Yves TINEVEZ authored
Mask to objects: Accept B&W contour images as input for cells.
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- 04 Dec, 2019 2 commits
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Jean-Yves TINEVEZ authored
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Jean-Yves TINEVEZ authored
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- 02 Sep, 2019 6 commits
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Sebastien Herbert authored
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Sebastien Herbert authored
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Sebastien Herbert authored
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Sebastien Herbert authored
This reverts commit a71c1fe2.
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Sebastien Herbert authored
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Sebastien Herbert authored
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- 22 Aug, 2019 3 commits
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Sebastien Herbert authored
Adds a the following command as a GUI StartupFcn which switches MATLAB to use Java file dialogs instead of native file dialogs (i.e. those of your operating system): >> com.mathworks.mwswing.MJFileChooserPerPlatform.setUseSwingDialog(1)
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Sebastien Herbert authored
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Sebastien Herbert authored
Error introduced in commit 46c3e745 about parallelization
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- 21 Aug, 2019 3 commits
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Sebastien Herbert authored
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Sebastien Herbert authored
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Sebastien Herbert authored
Produced with R2017b. New error at usage of the main method to be fixed, but GUI is running as is with relevant parameters accessible to user
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- 02 Aug, 2019 1 commit
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Sebastien Herbert authored
GUI was made with the app designer of MATLAB R2019a (or R2017a for the temp version). It has not been tested again under Ubuntu because of freezing issues when interacting with the GUI. Mathworks has been contacted Signed-off-by:
sebherbert <sherbert@pasteur.fr>
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- 31 Jul, 2019 2 commits
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Sebastien Herbert authored
improved speed but only by a marginal value (~20%) Signed-off-by:
sebherbert <sherbert@pasteur.fr>
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Sebastien Herbert authored
Now accepts a 2D elevation map in .tif format (z is the height of the tissue) Signed-off-by:
sebherbert <sherbert@pasteur.fr>
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- 23 Jul, 2019 1 commit
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Sebastien Herbert authored
Signed-off-by:
sebherbert <sherbert@pasteur.fr>
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- 16 Oct, 2017 4 commits
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Sebastien Herbert authored
This file must be updated regularly to stay up to date with the different commits
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Sebastien Herbert authored
Added the angular transformation of the ellipses to create a 3D orientation of the ellipses Refactoring the code for new variable names easier to handle. Last non nuclear commit! Signed-off-by:
sebherbert <sherbert@pasteur.fr>
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Sebastien Herbert authored
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Sebastien Herbert authored
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- 29 Sep, 2017 2 commits
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Sebastien Herbert authored
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Sebastien Herbert authored
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