diff --git a/LICENSE.txt b/LICENSE.txt index 51db6d2097e9a9cf2229497980dcf985f030c641..2bfccc5a8f4a20b65a9dbf34e492593c114754ff 100644 --- a/LICENSE.txt +++ b/LICENSE.txt @@ -1,4 +1,4 @@ -Copyright (c) 2018 - 2021, Céline Trébeau, Jean-Yves Tinevez +Copyright (c) 2020 - 2022, Institut Pasteur All rights reserved. Redistribution and use in source and binary forms, with or without modification, @@ -22,4 +22,3 @@ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - diff --git a/src/main/java/fr/pasteur/ida/zellige/Main.java b/src/main/java/fr/pasteur/ida/zellige/Main.java index 2be046b0ca850f0d4a6fc8b76a6b4bdfdd2dfe91..59cc04cce15792eb0cf66c8bb8608dc811b60512 100644 --- a/src/main/java/fr/pasteur/ida/zellige/Main.java +++ b/src/main/java/fr/pasteur/ida/zellige/Main.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige; diff --git a/src/main/java/fr/pasteur/ida/zellige/ReferenceSurfaceExtraction.java b/src/main/java/fr/pasteur/ida/zellige/ReferenceSurfaceExtraction.java index bc3bfdab8a06aedf48d84a0fa9f6065a9b303eaa..eb5afa19cc8fbd3f5a1cbd3075003a2685ea78ed 100644 --- a/src/main/java/fr/pasteur/ida/zellige/ReferenceSurfaceExtraction.java +++ b/src/main/java/fr/pasteur/ida/zellige/ReferenceSurfaceExtraction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/command/Zellige.java b/src/main/java/fr/pasteur/ida/zellige/command/Zellige.java index 2d26a67db57ad126ab29996dd79ccc98a11a772c..2d4471f7b6a7e8bd73c16c5a268d4f37e7a29546 100644 --- a/src/main/java/fr/pasteur/ida/zellige/command/Zellige.java +++ b/src/main/java/fr/pasteur/ida/zellige/command/Zellige.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.command; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/Coordinate.java b/src/main/java/fr/pasteur/ida/zellige/element/Coordinate.java index 834f14c87c8da4947a95847397172400be6d4583..43a74d8e9a4ceb5eb96dd6a89d6298c7f452663c 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/Coordinate.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/Coordinate.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; /** diff --git a/src/main/java/fr/pasteur/ida/zellige/element/Pixels.java b/src/main/java/fr/pasteur/ida/zellige/element/Pixels.java index 3417cb2084820e43ba9151b3d7a05e0a72cf5030..6237d12a9f34fb894bcb5cada2191e7ae7a040bb 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/Pixels.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/Pixels.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import java.util.ArrayList; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/Projection.java b/src/main/java/fr/pasteur/ida/zellige/element/Projection.java index 2f1dd3b71b33b775d9da96a977f2648028a64837..633db90615943890b30e8d1845bdbfaef0c7b23b 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/Projection.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/Projection.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import net.imglib2.img.Img; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ReferenceSurface.java b/src/main/java/fr/pasteur/ida/zellige/element/ReferenceSurface.java index 584de06d4a83bd5a61b1679c1d9699e1b0b9c08f..f6ef54cddd18310e84e979feefe1dfa753c14e66 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ReferenceSurface.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ReferenceSurface.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import net.imglib2.RandomAccessibleInterval; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/Surface.java b/src/main/java/fr/pasteur/ida/zellige/element/Surface.java index b99ebd67b26690b1abbfc037b43a9d2981bf0b2c..541781e997fb581c4ac3b59d4c69d6638002d6d6 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/Surface.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/Surface.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import fr.pasteur.ida.zellige.element.surfaceLine.SurfaceLine; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/AbstractOSE.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/AbstractOSE.java index 32325503e4354917d66fb08ef74a2cb19fb766a4..eaf9c1fc3d52ab1791ae8d76e2debb40ea333da5 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/AbstractOSE.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/AbstractOSE.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEList.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEList.java index 4bdcb78af93acd1882f5e167807c1e94b365ecc9..b13cbc7b387e8b6c4987c3e234447b9f2185aaee 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEList.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEList.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; import java.util.ArrayList; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEListArray.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEListArray.java index 88cd264434653c8e3e62ca59fd68586998994838..c58ebc0bcd343e6357c270c8a8e8049d868e702d 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEListArray.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEListArray.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; public class OSEListArray diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEStartingStatus.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEStartingStatus.java index 76ae64d68631309975f7e9f7e75cadfea768d230..9e66e997da1071c384e1691d3e9ce7fa90b8e466 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEStartingStatus.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/OSEStartingStatus.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; import org.slf4j.Logger; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/OseXZ.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/OseXZ.java index d2d948c9de8e1d71f11b37b395b81d3642272143..b1ec087eae42de012ff52a47bd6899a811bbbb87 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/OseXZ.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/OseXZ.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/ose/OseYZ.java b/src/main/java/fr/pasteur/ida/zellige/element/ose/OseYZ.java index 101175ab10743d3b1afe68972a5a51f0e501344e..ac47c6b7d1fdfd33436e6e8593d919612fde25de 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/ose/OseYZ.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/ose/OseYZ.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLine.java b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLine.java index 91ef6cc075c1bbafff3e3d8261a2bced7f9d4c0c..e2720c4551502648ea890cad758794179927772d 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLine.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLine.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.surfaceLine; import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineX.java b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineX.java index 1a6bb4c289c0aa74804c4bf7d6bfef267cbe17e2..29fd5b6575f4ebddeea8f5eb4dda2a1665312f2c 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineX.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineX.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.surfaceLine; import fr.pasteur.ida.zellige.element.ose.AbstractOSE; diff --git a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineY.java b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineY.java index 50367813c1906ca2de1a945883b18bbbcf1bbe50..2966f6286bd8a5ab0f135b853b2948b4f05bd8e1 100644 --- a/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineY.java +++ b/src/main/java/fr/pasteur/ida/zellige/element/surfaceLine/SurfaceLineY.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element.surfaceLine; import fr.pasteur.ida.zellige.element.ose.AbstractOSE; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/CheckBoxDisplay.java b/src/main/java/fr/pasteur/ida/zellige/gui/CheckBoxDisplay.java index 54c86a45477271011ba61acd1619c26b65140b03..ecc08c3c0a0a3fc5060e77c56c6a408c75e12441 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/CheckBoxDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/CheckBoxDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.scene.control.CheckBox; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ClassifiedImages.java b/src/main/java/fr/pasteur/ida/zellige/gui/ClassifiedImages.java index 66067e2c27349022bb900499d638b36335416cb2..3e9d186355a15028cf16e8670e82dc9d573a8952 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ClassifiedImages.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ClassifiedImages.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import net.imglib2.img.Img; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ConstructionController.java b/src/main/java/fr/pasteur/ida/zellige/gui/ConstructionController.java index 9f624db30237fd4b22656f7e0e38676adabd0289..1414654ec11f2cbbc85c5213c2e5cc36f1c0b7a6 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ConstructionController.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ConstructionController.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/DisplayController.java b/src/main/java/fr/pasteur/ida/zellige/gui/DisplayController.java index 782c99c42d0fb8756e896d5ad0c91d43313966f8..d239a7d56bf955a4177d1e712dec1bd43b33a4c9 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/DisplayController.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/DisplayController.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.fxml.FXML; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ImageFXDisplay.java b/src/main/java/fr/pasteur/ida/zellige/gui/ImageFXDisplay.java index df72c7e072e17fe16c0b53dc36f922285fae5786..744bb682c48c9dc388c6ff621654a588d617c258 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ImageFXDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ImageFXDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.scene.image.ImageView; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/LogAppender.java b/src/main/java/fr/pasteur/ida/zellige/gui/LogAppender.java index 7fcbc13144a85ad3e4e13b524241c693ec6644e1..c8c4477d53b620cde9ea0f5bf953fcba07716f07 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/LogAppender.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/LogAppender.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import ch.qos.logback.classic.Level; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/MainAppFrame.java b/src/main/java/fr/pasteur/ida/zellige/gui/MainAppFrame.java index 9b782fe292e814cd494dea1cdccadf9dede6d7e5..f0058a2adf138fbb71485c3f6fe7e02aaadb6adc 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/MainAppFrame.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/MainAppFrame.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/MainController.java b/src/main/java/fr/pasteur/ida/zellige/gui/MainController.java index 4232ff468e74351f007c060aeb0d0128610823f8..971797c45ff0cd3266a2d1a272ce7ce43ae20b05 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/MainController.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/MainController.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import fr.pasteur.ida.zellige.gui.exception.NoA3DStackException; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSlider.java b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSlider.java index 54bd5a0798ec3f46ad7a517b5547e2c27f59fe1a..63cba688cb12509ca161b2817ee99bd6c6b7622b 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSlider.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSlider.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.beans.NamedArg; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderDouble.java b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderDouble.java index a02e29404e7dd21d3a846b5b8233504f801daccb..33be7c2c1bbd71446c3ab4266110dde9598a12f0 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderDouble.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderDouble.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.beans.NamedArg; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderInteger.java b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderInteger.java index 8674d64ba070898640132767cfb5f2dc0e467035..566a098fd07ed30f1619084368f2d71669b5a655 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderInteger.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ParameterSliderInteger.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.beans.NamedArg; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ProjectionController.java b/src/main/java/fr/pasteur/ida/zellige/gui/ProjectionController.java index 55b34c0f0376542b2b081611f22089af4af1a954..25a3ae2c2a9911c5f86d9e75eee1427106533823 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ProjectionController.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ProjectionController.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import fr.pasteur.ida.zellige.element.Projection; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/SelectionController.java b/src/main/java/fr/pasteur/ida/zellige/gui/SelectionController.java index aba8494a08beb7690f92964301db9751b32ec8a1..6db4d22d344183fe3e6930e638ae5d8948355675 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/SelectionController.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/SelectionController.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/StepPanel.java b/src/main/java/fr/pasteur/ida/zellige/gui/StepPanel.java index a9d8c8387924085f314994d7ef375ae11b37a225..997c6c2b7ee5000906d77c0f8b58dd9476a8c7da 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/StepPanel.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/StepPanel.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.beans.NamedArg; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/ZSlicesSlider.java b/src/main/java/fr/pasteur/ida/zellige/gui/ZSlicesSlider.java index f2b5beb860c71039ab9f9e74407bacc4bad39725..80e66f279474426e1e55867d9fa991c1405632f2 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/ZSlicesSlider.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/ZSlicesSlider.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui; import javafx.fxml.FXML; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoA3DStackException.java b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoA3DStackException.java index 20711ebd3c8b09e6d6554c04c852ae9ff0159ecc..b483102433fa18eab3d4175ad570dd43b42c5358 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoA3DStackException.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoA3DStackException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.exception; public class NoA3DStackException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoInputException.java b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoInputException.java index 8be101697574abe24e69a983aca23289a19d33a9..29b26f5fd33c0865c5da0af9176c38fc3b7577a9 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoInputException.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NoInputException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.exception; public class NoInputException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NotANumberException.java b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NotANumberException.java index 3e871564c10bc3f1dff0b3f620d1662959ef4564..c434df0f0b69b45340efb3ba4c2a71ccfdf6416b 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/exception/NotANumberException.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/exception/NotANumberException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.exception; public class NotANumberException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/AbstractTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/AbstractTask.java index 74b0ee9ee1960d56ad0065bb76a6102b74e9477b..63367d5fdcdeb87941553777365c8023e1367d89 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/AbstractTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/AbstractTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import javafx.concurrent.Task; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/AmplitudeThresholdingTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/AmplitudeThresholdingTask.java index 00f66ff865e154041fa1036c7dd494745552e6ff..5e68372ca03bda790d4e31c520f7228e9e2667f3 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/AmplitudeThresholdingTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/AmplitudeThresholdingTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.gui.ClassifiedImages; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/ComputeClassificationImagesTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/ComputeClassificationImagesTask.java index ef08d49865ac6a743ea67099552ea293110a83c8..65c4082906fc1b2923f1f7873cb1d4a3ec24af3e 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/ComputeClassificationImagesTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/ComputeClassificationImagesTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.gui.ClassifiedImages; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/ConstructionCompletionTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/ConstructionCompletionTask.java index 7f8c79a35a13f45df31f112ebb83837a8f50390c..0181077e2d9bf66e0fe9433ebd3e46407882fc2c 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/ConstructionCompletionTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/ConstructionCompletionTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.element.ReferenceSurface; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/DisplayDatasetChoicesTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/DisplayDatasetChoicesTask.java index 1993dbcbf33918c79d8b171bf5af894420f9a327..b3826bd0bb3af32b7f6a457551c42ea9ce084039 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/DisplayDatasetChoicesTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/DisplayDatasetChoicesTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import net.imagej.Dataset; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/ImageFXDisplayTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/ImageFXDisplayTask.java index ecb4e2d6d97149c5819d6cdce387b9ea6b08dd14..1a92c8479ec842b7f822129d70cd3739486d052a 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/ImageFXDisplayTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/ImageFXDisplayTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.gui.ImageFXDisplay; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/InterClassificationTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/InterClassificationTask.java index c0e441dbac8fba7dc0ece42e56b0177ccc36f583..7fbe48400d1cbf89f54f82d8b24954c6516e44fe 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/InterClassificationTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/InterClassificationTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.steps.selection.classification.Classification; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/IslandSearchTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/IslandSearchTask.java index 63e06cfd6e965c36e2b114ca8d033364ad690c7e..2f5d8d41e2517557e879f8a6edf7cb6750f8acda 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/IslandSearchTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/IslandSearchTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.steps.selection.postTreatment.PostTreatment; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/OtsuThresholdingTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/OtsuThresholdingTask.java index 0ce6f483a81837d6df280c9c0c11e8150cf4bc85..32e3fb20f780deb6c60ca77bf4028d1d5b4476e8 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/OtsuThresholdingTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/OtsuThresholdingTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.gui.ClassifiedImages; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/PretreatmentTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/PretreatmentTask.java index 317e0b144cbefce35784d25d21c55175e77de71b..f23053a020d010a1899fbf0ab8ce08ea54244bf9 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/PretreatmentTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/PretreatmentTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.steps.selection.pretreatment.Pretreatment; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/RunFirstConstructionTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/RunFirstConstructionTask.java index b2a7e96094bd1795a337aa1c6b91c1875cafbae3..f4572b2a2c9a5227d11d0c18ddbc2cd00b28d5c5 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/RunFirstConstructionTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/RunFirstConstructionTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/RunSecondConstructionTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/RunSecondConstructionTask.java index e8af4528de72afcea7228648eb383167919bbfe5..c30b4800fbf4ecaa0ef1c3e67f94ddfcbe7d1ecf 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/RunSecondConstructionTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/RunSecondConstructionTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.element.Surface; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/SetCurrentDatasetTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/SetCurrentDatasetTask.java index 1763e6fe3b1c399e75b1b719aab09dc9b2980e30..7a83c081b7c73b94c3d8fa50d857930eb70cac74 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/SetCurrentDatasetTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/SetCurrentDatasetTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; diff --git a/src/main/java/fr/pasteur/ida/zellige/gui/task/SmoothingTask.java b/src/main/java/fr/pasteur/ida/zellige/gui/task/SmoothingTask.java index ae813ca65a3a433a6a7b98e382ef5cfa8197b3e0..d53594afb5cafe81fe27f06047a0a9a2b4ea354a 100644 --- a/src/main/java/fr/pasteur/ida/zellige/gui/task/SmoothingTask.java +++ b/src/main/java/fr/pasteur/ida/zellige/gui/task/SmoothingTask.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.gui.task; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/Utils.java b/src/main/java/fr/pasteur/ida/zellige/steps/Utils.java index 17e6dbbfed1864c6382a0df52027be3ebb4f9da0..fc8cb4befa639d97bb2d56d963566c69a819d2a1 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/Utils.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/Utils.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps; import net.imglib2.RandomAccess; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/ConstructionCompletion.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/ConstructionCompletion.java index e51a5bb84f486190b9d108e02371d230007a0437..7bcfadfdf0062beff482ba6daa728a3d66eaf5cd 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/ConstructionCompletion.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/ConstructionCompletion.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/Interpolation.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/Interpolation.java index 3faa344b41ab080e69dd1162c7e4ae0dccc3b4f5..3c624ad6740fb4d92fa0c9787fe220d84fce7340 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/Interpolation.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/Interpolation.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction; import net.imglib2.Cursor; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/FirstRoundConstructionException.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/FirstRoundConstructionException.java index 29ee32d588064e19deb29dd0e0ce5995cc6ca447..f024b9560bdf53d6818c5338812dddea9212b3d5 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/FirstRoundConstructionException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/FirstRoundConstructionException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.exception; public class FirstRoundConstructionException extends NoSurfaceFoundException diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/NoSurfaceFoundException.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/NoSurfaceFoundException.java index 92272c8ea307b076870124781888f1127e055ef2..7effc462b233842614a1e1e641e5d00477ff0628 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/NoSurfaceFoundException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/NoSurfaceFoundException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.exception; public class NoSurfaceFoundException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/SecondRoundConstructionException.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/SecondRoundConstructionException.java index b112b9ed70feaf05a3c5e72d3f0135bbe18e0f4d..a651e7fce689588280ceabf20125695e735c2d7f 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/SecondRoundConstructionException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/exception/SecondRoundConstructionException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.exception; public class SecondRoundConstructionException extends NoSurfaceFoundException diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionParameters.java index ff75096703c6231c44b6d3379540445b5fc3092b..9607bec078e5734335b29c5fedbd04ffc2e091cd 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds; public class ConstructionParameters diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionRound.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionRound.java index 452cdb03e93595020080075b2db2608136924d36..e43a6282511b69195f5285a8917d3731ab13e8ac 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionRound.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ConstructionRound.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/FirstRoundConstruction.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/FirstRoundConstruction.java index be25721571c675e32fa1f856f6309c7bcfa30c8a..c5b689c0d6a03b2462e2e1bfe8b8fb293c8a244f 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/FirstRoundConstruction.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/FirstRoundConstruction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/SecondRoundConstruction.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/SecondRoundConstruction.java index d4c7055800842521de4574d9a92777bced2abdde..7ef1c3b177226f6175134feb905e691954a7d652 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/SecondRoundConstruction.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/SecondRoundConstruction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstruction.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstruction.java index 4f36147e6c5c5b709adafee623ee3181833a487a..7f22314c37d86cbfd260ca2c6ee2fa14eba8c3f6 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstruction.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstruction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionXZ.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionXZ.java index 53a66ac2e1e35f4cbe29c965bc3ab16eed94644f..56b47602f0e597a1588e398a7d995f6f874549fd 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionXZ.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionXZ.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionYZ.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionYZ.java index 4831b0a087fb9ca988b551483b77fc9773806fc1..9e124fdc5441904daf36907923825446464b75f7 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionYZ.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/ose/OseConstructionYZ.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds.ose; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfaceConstruction.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfaceConstruction.java index 5626215afcd96a559bed8a54c9f7903f499d1977..991e97c66f3920ac6fd828853c9995d2e84d23d9 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfaceConstruction.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfaceConstruction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds.surface; import fr.pasteur.ida.zellige.element.Surface; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfacesConstruction.java b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfacesConstruction.java index c07800936323dc6f2383fbef719063cb2cbf3828..0192b47719fa3fee98d4f30b8498576b40abe5f0 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfacesConstruction.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/construction/rounds/surface/SurfacesConstruction.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.construction.rounds.surface; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/projection/DisplayParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/projection/DisplayParameters.java index 1134e1356037bf2ea6a101dfc7913392cf542958..87dc30e092d64c2257f0c9c3479d65ec5c33f19a 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/projection/DisplayParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/projection/DisplayParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.projection; public class DisplayParameters diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/projection/NoPossibleDisplayException.java b/src/main/java/fr/pasteur/ida/zellige/steps/projection/NoPossibleDisplayException.java index ac88bb9051656961f5500d23df562befe3deef3e..1f87da2441042de668014aa8bf724050f96a6446 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/projection/NoPossibleDisplayException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/projection/NoPossibleDisplayException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.projection; public class NoPossibleDisplayException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/projection/ProjectionParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/projection/ProjectionParameters.java index 75ec9dbe3015e20fc9ec74544bed7fd7cf9b2b56..92ee3d79a886670b6637bc52847abaeb1a3cd96b 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/projection/ProjectionParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/projection/ProjectionParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.projection; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/projection/ReferenceSurfaceProjection.java b/src/main/java/fr/pasteur/ida/zellige/steps/projection/ReferenceSurfaceProjection.java index c851c49545ac4d9e6d191307091bc673e20e4a68..60b33a7021f8fdbda3628600646dcaaa2ebdd312 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/projection/ReferenceSurfaceProjection.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/projection/ReferenceSurfaceProjection.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.projection; import fr.pasteur.ida.zellige.element.ReferenceSurface; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/Selection.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/Selection.java index 32c393d61ffcb763571184f1fec43723b59c4856..5f96d0769d0d0e44b901ba861c7674d4c3a7267a 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/Selection.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/Selection.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/AmplitudeClassification.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/AmplitudeClassification.java index 724b7bec312183a87207ca3b04579c59e68d1ac8..37c2ace40228a29a75e84d182686d5ffaebff3ea 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/AmplitudeClassification.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/AmplitudeClassification.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Classification.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Classification.java index dbb238e5ca29a4ff90337a84eb6a8124b4c1aaee..678409ca69099c2944b2195d4709d65fb05d4c44 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Classification.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Classification.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/ClassificationParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/ClassificationParameters.java index dba2184ccfae4a06b8ceea2316ecd1beacaa6d32..1c66f0ecb95ac66d66188bc591e511db09ab54a4 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/ClassificationParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/ClassificationParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/HistogramZ.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/HistogramZ.java index fe5da0c07487f5d3bec6e503100fbed2cea7f00b..b6e4419910e97cef4b6facc06bee5a45cc0300d8 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/HistogramZ.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/HistogramZ.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; @@ -203,4 +231,4 @@ public class HistogramZ< T > implements Algorithm, Benchmark return pTime; } -} \ No newline at end of file +} diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Otsu.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Otsu.java index 8dc0cfa475d8f8ed93fd5b2df99a441caa0d4897..046434a8c83c9988da954c5a8946fcf4f15ec255 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Otsu.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Otsu.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; import net.imglib2.Cursor; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/OtsuClassification.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/OtsuClassification.java index d09660e6d5c919e93f0504a338c05a004a4e80e4..654db06b2bae346cc4a17d34f7f59874ae5b02ac 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/OtsuClassification.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/OtsuClassification.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; import fr.pasteur.ida.zellige.steps.Utils; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Threshold.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Threshold.java index 10ddd6f7c1e6692f837c72b6c9b403a283e66dcb..8ee22b82bf4fbc2e0978645b67690590e361fa4b 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Threshold.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/classification/Threshold.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.classification; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/DataValidationException.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/DataValidationException.java index 5db6709273ca9b0753d5e5ffe882de2f928f8604..d312c649a186ce033942bb49909b35cd9b8abbc1 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/DataValidationException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/DataValidationException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.exception; public class DataValidationException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/EmptyOutputException.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/EmptyOutputException.java index 20ade7e36aac8eb481ce80be537699a9fb9fc1bb..e044fb1c61fb39adb50a44488ee071efc730979c 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/EmptyOutputException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/EmptyOutputException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.exception; public class EmptyOutputException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/NoClassificationException.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/NoClassificationException.java index 0884a9c32f888204b754eb11c1a688d9a25cb5de..5612fe1854d31e434a244c22dfcbd89e58e04a48 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/NoClassificationException.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/exception/NoClassificationException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.exception; public class NoClassificationException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatment.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatment.java index 4f4b84aee8d448cfb8f516a9547dab7843ecbc88..2e53cd32f4aa95ddc0aa4c33e52c85c4b6425567 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatment.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatment.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatmentParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatmentParameters.java index 9ec464eef190b5d34c1261846512e5c4c540bcd3..012afcc6fed2fc0894f43b99e2fcec77ecb79496 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatmentParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/PostTreatmentParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Island.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Island.java index 434e6c4a4dc6edeace29ea1db74711abc940c2a9..5e743ad6f2ce7b9ab5f566016fe7a644214dce74 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Island.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Island.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch; import java.util.ArrayList; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/IslandSearch.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/IslandSearch.java index 203db928678b0f85b97652f30fe7fff88471ac69..7ef954790535ac7c203997059e90edce924c09c5 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/IslandSearch.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/IslandSearch.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch; import fr.pasteur.ida.zellige.steps.Utils; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Sand.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Sand.java index 436ae40803dd4dc9d0c83f35a9e0bb033e9a12fe..dd2118df3c82d845bf9fe83bc8ee76050ef078c0 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Sand.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/Sand.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch; public class Sand diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/World.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/World.java index 621bce163badef64a60d5eb43c657f303a292dd6..cc09070677c4a8f0e6aff563e4ca192c37363d43 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/World.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/postTreatment/islandSearch/World.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/Pretreatment.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/Pretreatment.java index c2ce21459708ac0ea6d3ba353a4ae55aa3001f13..b8fcda26ebc0c7988f26b6df5b00800f134ed0af 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/Pretreatment.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/Pretreatment.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.pretreatment; import net.imglib2.RandomAccessible; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/PretreatmentParameters.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/PretreatmentParameters.java index 77845e725b8d9560f48444e0e6918f729508c367..7b78c63564b9023ec0be88e88f5de8f2df8f2e45 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/PretreatmentParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/pretreatment/PretreatmentParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.pretreatment; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/Derivative.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/Derivative.java index 0e507fc329bdc92d737af84e78fe4ddb896fddd7..62e90f955b178bbe7949e0a348d71f4aaf3ebb52 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/Derivative.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/Derivative.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.util; import net.imglib2.RandomAccessible; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection.java index 198acb1fb2307dfb4fdce4d843e5bd26793cecb6..2b9d671c51708059eb443124a5fac36ea4a7ece3 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.util; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection2D.java b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection2D.java index 38352416038c25a84faac6a1ae11d89da425067d..0fdf64270ffad43d14182e4a70755be5e1b1902e 100644 --- a/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection2D.java +++ b/src/main/java/fr/pasteur/ida/zellige/steps/selection/util/ExtremaDetection2D.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.steps.selection.util; import fr.pasteur.ida.zellige.steps.Utils; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/All_GT_Display.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/All_GT_Display.java index 9de1947fdb8d81e46bcec5eaa848861add0fd96e..45a937baa1eab953e1225d3f6b85a2a76213af72 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/All_GT_Display.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/All_GT_Display.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_DifferenceDisplay.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_DifferenceDisplay.java index dd55b4b05c61f4de12f1f565e601b5ac82b9df2a..842b7268d20396202adf8bcce2d35572b8547b95 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_DifferenceDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_DifferenceDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_Display.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_Display.java index dbad29f79227ad6177c3edee9a5ae98f8e98ce6d..3548086a2b5715000612503e92958a9d194de981 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_Display.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_GT_Display.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import net.imglib2.RandomAccess; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages.java index 4ea5ffda25c00d00a80d28a511b3b8c334874360..ce43c76d8e8865830aa758d2c6a70df24061efb4 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages_2D.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages_2D.java index 4300ce35a621bd455a22e07cb77962e6f52910a2..d70d85e4a8d7ef7fa7cb3b50906e5bc6de99fa35 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages_2D.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HM_black_GT_distanceDisplay_realImages_2D.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HMvsGT_Display.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HMvsGT_Display.java index 74ea63d827204c1ee8e6db4bd5ddefe1ab52dbbf..f18d3d6c0cce1eb6afd7c6543712f513be814781 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HMvsGT_Display.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HMvsGT_Display.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HeightMapArrayWriter.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HeightMapArrayWriter.java index dce0ed3616cf6a9b47eeb1d51b242269ed9a41fa..856a9c59c995f642e86126199f40d1fcb265b475 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HeightMapArrayWriter.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/HeightMapArrayWriter.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import fr.pasteur.ida.zellige.element.Surface; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/LocalMaximumsDisplay.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/LocalMaximumsDisplay.java index dff2d1e5360e225bc0c5931a2f6f76300f82d68d..98c5acd7e539acb4f3631d05cbd3b7bfe19580dc 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/LocalMaximumsDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/LocalMaximumsDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEDisplay.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEDisplay.java index a979fe4ecb4ff8e1842e4f53c38e07ab9197c8ad..130e380f11b39d2ee8c0752460a474a47adc4301 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEListDisplay.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEListDisplay.java index 4ec2b92e0e1dfb02abc8e7de273130fd28e6ad72..62ee29723c666e1127dd18157c2806867e623d92 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEListDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/OSEListDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SelectedPixelsArrayWriter.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SelectedPixelsArrayWriter.java index 25a4ad900c7688dfdf31f5ffbe1d3213612d87f8..307232b822085c9b58eda78e84c4038ba973fded 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SelectedPixelsArrayWriter.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SelectedPixelsArrayWriter.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SurfaceDisplay.java b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SurfaceDisplay.java index 97fa06ff8f2926cce4be3f5f7796308f57c95b76..a0957a6a8749a27f3a7e37ee9e1bb0f156c71b60 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SurfaceDisplay.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/jzy3D/SurfaceDisplay.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.jzy3D; import fr.pasteur.ida.zellige.element.Coordinate; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/CSVWriter.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/CSVWriter.java index 0d1a9643be80ee5dda5195dd3e97a7d9524a4aee..ac303450bccc749d4a1cbd59e0b159b0e6ad45cf 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/CSVWriter.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/CSVWriter.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import org.slf4j.Logger; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/DistanceImageWriter.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/DistanceImageWriter.java index eb7c405a7f6ad447a924bca0cbd7be76ccb2d631..3d458fae73e9d65aacf741f3458ac071936ecefd 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/DistanceImageWriter.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/DistanceImageWriter.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import ij.ImageJ; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/GroundTruthConversion.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/GroundTruthConversion.java index c69547ae575bde2346d6bbf26e45b1cd0f496ddb..510c1ada9ec740047f397afa0bc73a783098b7ac 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/GroundTruthConversion.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/GroundTruthConversion.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import ij.ImageJ; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/ParameterSweepFiles.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/ParameterSweepFiles.java index 4a6fc1295134a808106dcb46b4ebf8fa623e2455..9d5fab1b420f93f6ae127e277cabb7385eaf4bc8 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/ParameterSweepFiles.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/ParameterSweepFiles.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import io.scif.img.IO; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/RMSEAndCoverageComputation.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/RMSEAndCoverageComputation.java index abac317ebb27e4110991ac7f605f84a9c7c38ad8..0399011f2ab3aeb166d6594b3f1e642ad962c2a8 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/RMSEAndCoverageComputation.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/RMSEAndCoverageComputation.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import fr.pasteur.ida.zellige.steps.Utils; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/ZParameters.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/ZParameters.java index e773e3b6aca1f395a7d4de03fc61195e307f3cf6..61b7968acd21b2a340d53b8de6b05246d647bc92 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/ZParameters.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/ZParameters.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/ZelligePipelineAnalyse.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/ZelligePipelineAnalyse.java index 3bf7ba8f94042f00a9fb919330540380c15fade1..96700df097e147f3f749d92ad5086803957d6c65 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/ZelligePipelineAnalyse.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/ZelligePipelineAnalyse.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test; import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/DifferentReferenceTestedSizeException.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/DifferentReferenceTestedSizeException.java index 61bb77e9fac0cef81c837589160f1ce5a2d418e6..c92c97df160795995a1971866c40b6f0ad8bc8c2 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/DifferentReferenceTestedSizeException.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/DifferentReferenceTestedSizeException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test.exception; public class DifferentReferenceTestedSizeException extends Exception diff --git a/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/NotAnHeightMapException.java b/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/NotAnHeightMapException.java index 3b2609348266d00fc28ca7d970170584c2e4aa59..01895380d6590db1bc4ab5bc07abc421807165c1 100644 --- a/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/NotAnHeightMapException.java +++ b/src/main/java/fr/pasteur/ida/zellige/utils/test/exception/NotAnHeightMapException.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils.test.exception; public class NotAnHeightMapException extends Exception diff --git a/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme1.css b/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme1.css index e84320af31f37de9294286b1fed29cff4305fdd8..f2bf5f5d8d0e7262f65016ae38146a419dc83e5b 100644 --- a/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme1.css +++ b/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme1.css @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ .background { -fx-background-color: #733785; } @@ -37,4 +65,4 @@ .spinner { -fx-font: 10px System; -} \ No newline at end of file +} diff --git a/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme2.css b/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme2.css index 2aaa368102c6e4bb5e1708f9a80002aff235740c..039321b6db31eb0c605b437f3cd5cd2d367d69e2 100644 --- a/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme2.css +++ b/src/main/resources/fr.pasteur.ida.zellige.gui.view/theme2.css @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ .root { -fx-base: #ececec; @@ -150,4 +178,4 @@ parameter-slider-integer.label { .step.vbox { -fx-border-radius: 0.5em 2em 0.5em 0.5em; -fx-border-color: lightgrey; -} \ No newline at end of file +} diff --git a/src/main/resources/gui.properties b/src/main/resources/gui.properties index d2b3367b8a90a1ae3c10a4c16844a623b5878333..b559d6b7142be08fb7f9350fe826b80d9e48cb7f 100644 --- a/src/main/resources/gui.properties +++ b/src/main/resources/gui.properties @@ -1,7 +1,35 @@ +### +# #%L +# Zellige +# %% +# Copyright (C) 2020 - 2022 Institut Pasteur +# %% +# Redistribution and use in source and binary forms, with or without +# modification, are permitted provided that the following conditions are met: +# +# 1. Redistributions of source code must retain the above copyright notice, +# this list of conditions and the following disclaimer. +# 2. Redistributions in binary form must reproduce the above copyright notice, +# this list of conditions and the following disclaimer in the documentation +# and/or other materials provided with the distribution. +# +# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE +# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE +# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR +# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF +# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS +# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN +# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) +# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE +# POSSIBILITY OF SUCH DAMAGE. +# #L% +### #[0-50] INTERVAL1=[0-9]|[1-4][0-9]|[5][0] #[0-10] INTERVAL2=[0-9]|[1][0] #[0.0 - 1.0] INTERVAL3=0?\\.[0-9]|[1]\\.[0]?|[0]|[1] -# \ No newline at end of file +# diff --git a/src/main/resources/logback.xml b/src/main/resources/logback.xml index 59972890fa52d9566b6f2c0b4a188dbf742201b5..5f1c55a5d92d4890a7398d88eaf98b1d035161ba 100644 --- a/src/main/resources/logback.xml +++ b/src/main/resources/logback.xml @@ -1,3 +1,31 @@ +<!-- + #%L + Zellige + %% + Copyright (C) 2020 - 2022 Institut Pasteur + %% + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are met: + + 1. Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + 2. Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + POSSIBILITY OF SUCH DAMAGE. + #L% + --> <configuration> <appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender"> diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/DoubleParameterSweep.java b/src/test/java/fr/pasteur/ida/zellige/behavior/DoubleParameterSweep.java index f09d3619a5b26b603c8e3da70a503c922b49c62c..dba9cef9a6cda36abedcba346b1c835b0275e2f4 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/DoubleParameterSweep.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/DoubleParameterSweep.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ //package fr.pasteur.ida.zellige.behavior; // //import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/OneSurfaceConstructionTest.java b/src/test/java/fr/pasteur/ida/zellige/behavior/OneSurfaceConstructionTest.java index e50563fa1342103f7c90645f996c45dff554a6dd..b076b1a9ad1d475c5c4fa020f7267fa855e4c048 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/OneSurfaceConstructionTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/OneSurfaceConstructionTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; class OneSurfaceConstructionTest @@ -5,4 +33,4 @@ class OneSurfaceConstructionTest -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweep.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweep.java index e493d3f8ede4b81782fa64618feda3802e80119f..622deaee639baea4e5d5ae380b6cb3a96e5dbba3 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweep.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweep.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCochlee2.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCochlee2.java index b8f285c4be28a3a3a49cb1f37d7cc3e798d7ef8a..833947d9c82ae6e32c84e8f481b66fe814d94fba 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCochlee2.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCochlee2.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCulture.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCulture.java index cc6c8b1189a3b834e955232da8b02d053bb1e1a9..085ad523558a280adc6a74f093435917e531ba6a 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCulture.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepCulture.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepMouche.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepMouche.java index 555e356f8403de4b664fb718790689d83a861931..41822cff07bf9e08df1b1b3a58d2aada4e09de06 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepMouche.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepMouche.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepOrganoid.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepOrganoid.java index 723c6d144b940b2f32268cd9c037c28edadb23db..719db557eb490e74c849f888a302cda4ed2455f8 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepOrganoid.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepOrganoid.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepPhantom.java b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepPhantom.java index 019eb98df43d9a8e2141d8bae7ad060652681479..5e8dd59ecc7411e7e8828b0891953f86f64e9386 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepPhantom.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/ParameterSweepPhantom.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.utils.test.*; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/PipelineTest.java b/src/test/java/fr/pasteur/ida/zellige/behavior/PipelineTest.java index 4f3ad999356c2b6cc9ed6ad8a5e225fea450c22f..2014e845c5228ac9fc036d9419bc1f2c073579f1 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/PipelineTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/PipelineTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ //package fr.pasteur.ida.zellige.behavior; // //import fr.pasteur.ida.zellige.ReferenceSurfaceExtraction; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/StartingOSE_SameSurfaceTest.java b/src/test/java/fr/pasteur/ida/zellige/behavior/StartingOSE_SameSurfaceTest.java index 61553934d71e68352a47d1bc71bc3c9ed89739bb..29003a125b59e020d2a1a1595f908101521bd4bd 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/StartingOSE_SameSurfaceTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/StartingOSE_SameSurfaceTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import fr.pasteur.ida.zellige.element.Pixels; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceConstructionBehaviorTest.java b/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceConstructionBehaviorTest.java index b185f666c43fb84516b2b5a651b68e2095554613..9be2483db031cc37d57a42e50a012ad292b350fd 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceConstructionBehaviorTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceConstructionBehaviorTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; import net.imglib2.type.NativeType; diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceLineConstructionBehaviorTest.java b/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceLineConstructionBehaviorTest.java index fb40f4f00b0ac454ce033294094ff3b5c79c323e..3f0465fc5e781b7c815405131d9bd777f11d67d5 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceLineConstructionBehaviorTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/SurfaceLineConstructionBehaviorTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; public class SurfaceLineConstructionBehaviorTest diff --git a/src/test/java/fr/pasteur/ida/zellige/behavior/Utils.java b/src/test/java/fr/pasteur/ida/zellige/behavior/Utils.java index 458ccc8533e9cafed1b4a9be78a004fa951c61d3..fee5a488b8cb0e66f4351a39fc47293ffc9f18df 100644 --- a/src/test/java/fr/pasteur/ida/zellige/behavior/Utils.java +++ b/src/test/java/fr/pasteur/ida/zellige/behavior/Utils.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.behavior; public class Utils diff --git a/src/test/java/fr/pasteur/ida/zellige/element/PixelsTest.java b/src/test/java/fr/pasteur/ida/zellige/element/PixelsTest.java index 6fd4b8875536895707495c3eec64d49cec995080..867573f6621f930310ff1bff14e0ad1f3f2a1c26 100644 --- a/src/test/java/fr/pasteur/ida/zellige/element/PixelsTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/element/PixelsTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import org.junit.jupiter.api.DisplayName; @@ -75,4 +103,4 @@ class PixelsTest void testToString() { } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/element/SurfaceTest.java b/src/test/java/fr/pasteur/ida/zellige/element/SurfaceTest.java index f03cc851678bfc5971e54562ca467ded7dcb8498..fe78a7532a94d5b0a217073841f73ab03f837065 100644 --- a/src/test/java/fr/pasteur/ida/zellige/element/SurfaceTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/element/SurfaceTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.element; import org.junit.jupiter.api.Test; @@ -65,4 +93,4 @@ class SurfaceTest void getHeight() { } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/parameters/ClassificationParametersTest.java b/src/test/java/fr/pasteur/ida/zellige/parameters/ClassificationParametersTest.java index 0029d1df97a487e3c726c5f07a2d5c44f46045f5..57e64c641ffedcbfb32201435e99ad06863b67d7 100644 --- a/src/test/java/fr/pasteur/ida/zellige/parameters/ClassificationParametersTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/parameters/ClassificationParametersTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.parameters; import fr.pasteur.ida.zellige.steps.selection.classification.ClassificationParameters; diff --git a/src/test/java/fr/pasteur/ida/zellige/parameters/PixelSelectionParametersTest.java b/src/test/java/fr/pasteur/ida/zellige/parameters/PixelSelectionParametersTest.java index 567a98da03b0d64ee0d037a61e7e7c58cd68e62b..31fd7d439805ac12f393152aa9d880ec922ebdb1 100644 --- a/src/test/java/fr/pasteur/ida/zellige/parameters/PixelSelectionParametersTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/parameters/PixelSelectionParametersTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.parameters; public class PixelSelectionParametersTest diff --git a/src/test/java/fr/pasteur/ida/zellige/parameters/PretreatmentParametersTest.java b/src/test/java/fr/pasteur/ida/zellige/parameters/PretreatmentParametersTest.java index fd9968b0efa8389f4f21e66ee161bbfe0741c3be..479fbb424b3d5125ec32688897001071414816c8 100644 --- a/src/test/java/fr/pasteur/ida/zellige/parameters/PretreatmentParametersTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/parameters/PretreatmentParametersTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.parameters; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/test/java/fr/pasteur/ida/zellige/parameters/ProjectionParametersTest.java b/src/test/java/fr/pasteur/ida/zellige/parameters/ProjectionParametersTest.java index 17661d08e1ed653b9491ea3d5094578e966aaba2..b3cd0c57b863825b4674f3a1457f973bcbf9b495 100644 --- a/src/test/java/fr/pasteur/ida/zellige/parameters/ProjectionParametersTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/parameters/ProjectionParametersTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.parameters; import fr.pasteur.ida.zellige.steps.projection.ProjectionParameters; diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/PixelClassificationTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/PixelClassificationTest.java index cf45ff446e9a013b443ce3cd36a6914d3eb729e5..8ac5107482c236d9cbf002349c267faefe2a969a 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/PixelClassificationTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/PixelClassificationTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection; class PixelClassificationTest @@ -66,4 +94,4 @@ class PixelClassificationTest // Mockito.verify( classificationSpy, Mockito.times( 1 ) ).processAmplitudeClassification( rai, factory, amplitudeThreshold ); // } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/IslandTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/IslandTest.java index dd3624e75c8f48fc4624428659262b42212f5801..d8b495e87de9a02dbf7134006120b50d931af236 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/IslandTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/IslandTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.islandSearch; import fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch.Island; @@ -59,4 +87,4 @@ class IslandTest island.reset(); assertTrue( island.get( 0 ).isNotVisited() ); } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/SandTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/SandTest.java index a8fe73568ae5a0fa9f6213632adb88ec4be9de4b..003149f6c2ee1cc5ade3d146ef334dbb9e7b6429 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/SandTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/SandTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.islandSearch; import fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch.Sand; @@ -60,4 +88,4 @@ class SandTest Sand sand2 = new Sand( 0, 0, 0 ); assertTrue( sand.equals( sand2 ) ); } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/WorldTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/WorldTest.java index 2986ff619740810b777ae6481fb7686ae6a2bdfb..bcde1efdb3f9c28c1e0f7fa80ca78cfedc0bd756 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/WorldTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/islandSearch/WorldTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.islandSearch; import fr.pasteur.ida.zellige.steps.selection.postTreatment.islandSearch.Sand; @@ -79,4 +107,4 @@ class WorldTest } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/postTreatment/PostTreatmentTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/postTreatment/PostTreatmentTest.java index c1f9d3a97ed9adccdc6a4a360ffa46d133ead6ef..f5b17baa23b296a335af6a6752419dbb93142ea0 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/postTreatment/PostTreatmentTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/postTreatment/PostTreatmentTest.java @@ -1,6 +1,34 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.postTreatment; class PostTreatmentTest { -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/pretreatment/PreTreatmentTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/pretreatment/PreTreatmentTest.java index a7100966bd1be9c4c9dc5a41c1556223aa0b2964..8ff4d20b92a22b11ef479a965527526fa2824e8d 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/pretreatment/PreTreatmentTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/pretreatment/PreTreatmentTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.pretreatment; public class PreTreatmentTest diff --git a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/util/ExtremaDetectionTest.java b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/util/ExtremaDetectionTest.java index a00579305265b036d23b2d3cfa9dcd5f66227ce7..53dd58b78ff65116fe5631fe653180909eba9843 100644 --- a/src/test/java/fr/pasteur/ida/zellige/pixelSelection/util/ExtremaDetectionTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/pixelSelection/util/ExtremaDetectionTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.pixelSelection.util; import fr.pasteur.ida.zellige.steps.selection.exception.DataValidationException; diff --git a/src/test/java/fr/pasteur/ida/zellige/utils/LocalExtremaDetectionTest.java b/src/test/java/fr/pasteur/ida/zellige/utils/LocalExtremaDetectionTest.java index 9a2e2793e2cfa9e805bbd078b3b30380647bca23..52b895b755aa0d7ac2007e0db595c3c8df22ac0a 100644 --- a/src/test/java/fr/pasteur/ida/zellige/utils/LocalExtremaDetectionTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/utils/LocalExtremaDetectionTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils; import org.junit.jupiter.api.Test; @@ -16,4 +44,4 @@ class LocalExtremaDetectionTest void findMaxima() { } -} \ No newline at end of file +} diff --git a/src/test/java/fr/pasteur/ida/zellige/utils/RMSEAndCoverageComputationTest.java b/src/test/java/fr/pasteur/ida/zellige/utils/RMSEAndCoverageComputationTest.java index e4fa44386287f237056fa022c68c38f2ac3863e5..73e48eb8c7c83de0c46cd3063bf42b26422a708e 100644 --- a/src/test/java/fr/pasteur/ida/zellige/utils/RMSEAndCoverageComputationTest.java +++ b/src/test/java/fr/pasteur/ida/zellige/utils/RMSEAndCoverageComputationTest.java @@ -1,3 +1,31 @@ +/*- + * #%L + * Zellige + * %% + * Copyright (C) 2020 - 2022 Institut Pasteur + * %% + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions are met: + * + * 1. Redistributions of source code must retain the above copyright notice, + * this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright notice, + * this list of conditions and the following disclaimer in the documentation + * and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE + * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE + * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR + * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF + * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS + * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN + * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) + * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE + * POSSIBILITY OF SUCH DAMAGE. + * #L% + */ package fr.pasteur.ida.zellige.utils; import fr.pasteur.ida.zellige.utils.test.RMSEAndCoverageComputation;