From 6548694109cee7cad376043b9a2f66e81a896f09 Mon Sep 17 00:00:00 2001
From: ctrebeau <ctrebeau@pasteur.fr>
Date: Mon, 18 Oct 2021 12:34:46 +0200
Subject: [PATCH] feature - add default value for each parameter in
ZelligeCommand class
---
.../ida/zellige/command/ZelligeCommand.java | 53 ++++++++++---------
1 file changed, 27 insertions(+), 26 deletions(-)
diff --git a/src/main/java/fr/pasteur/ida/zellige/command/ZelligeCommand.java b/src/main/java/fr/pasteur/ida/zellige/command/ZelligeCommand.java
index 020b895d..3c86246e 100644
--- a/src/main/java/fr/pasteur/ida/zellige/command/ZelligeCommand.java
+++ b/src/main/java/fr/pasteur/ida/zellige/command/ZelligeCommand.java
@@ -40,46 +40,47 @@ public class ZelligeCommand< T extends RealType< T > & NativeType< T > > extends
private ImageDisplayService imageDisplayService;
@Parameter
private LogService logService;
- @Parameter
- private double amplitude;
- @Parameter
- private double otsu;
+ @Parameter( label = "Amplitude threshold", min = "0", max = "2", stepSize = "0.1" )
+ private double amplitude = 1;
- @Parameter
- private int sigmaXY;
+ @Parameter( label = "Otsu threshold", min = "0", max = "2", stepSize = "0.1" )
+ private double otsu = 0.1;
- @Parameter
- private int sigmaZ;
+ @Parameter( label = "XY dilatation", min = "0", max = "10" )
+ private int sigmaXY = 1;
- @Parameter
- private int islandSize;
+ @Parameter( label = "Z dilatation", min = "0", max = "10" )
+ private int sigmaZ = 1;
- @Parameter
- private int connexity;
+ @Parameter( label = "Island size", min = "0", max = "50", stepSize = "5" )
+ private int islandSize = 5;
- @Parameter
- private double startingOsSize1;
+ @Parameter( label = "Island neighbourhood", min = "4", max = "8", stepSize = "4" )
+ private int connexity = 4;
- @Parameter
- private int overlap1;
+ @Parameter( label = "First round Starting OSE size", min = "0", max = "1", stepSize = "0.1" )
+ private double startingOsSize1 = 0.8;
- @Parameter
- private double connexityRate1;
+ @Parameter( label = "First round overlap", min = "0", max = "50" )
+ private int overlap1 = 10;
- @Parameter
- private double startingOsSize2;
+ @Parameter( label = "First round matching rate", min = "0.5", max = "1", stepSize = "0.05" )
+ private double connexityRate1 = 0.8;
- @Parameter
- private int overlap2;
+ @Parameter( label = "Second round Starting OSE size", min = "0", max = "1", stepSize = "0.1" )
+ private double startingOsSize2 = 0.1;
- @Parameter
- private double connexityRate2;
+ @Parameter( label = "Second round overlap", min = "0", max = "50", stepSize = "5" )
+ private int overlap2 = 10;
- @Parameter
+ @Parameter( label = "Second round matching rate", min = "0.5", max = "1", stepSize = "0.05" )
+ private double connexityRate2 = 0.9;
+
+ @Parameter( min = "0.05", max = "1" )
private double surfaceMinSizeFactor;
- @Parameter
+ @Parameter( min = "0" )
private int delta;
--
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