From 138172fbfe2ff16a88133b6637279a80be29a512 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Herv=C3=A9=20=20MENAGER?= <herve.menager@pasteur.fr>
Date: Tue, 7 Nov 2017 17:09:03 +0100
Subject: [PATCH] add new "name" property for the PPI based on proteins in
complexes
Former-commit-id: cac6d4ec52af22686f1f100b4b6662ebd5b7c2ee
---
ippisite/ippidb/models.py | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/ippisite/ippidb/models.py b/ippisite/ippidb/models.py
index 52c5d875..ad07f70a 100644
--- a/ippisite/ippidb/models.py
+++ b/ippisite/ippidb/models.py
@@ -220,6 +220,17 @@ class Ppi(models.Model):
# this is the less efficient query ever seen, FIXME
return PpiComplex.objects.filter(ppi=self, complex__in=ProteinDomainBoundComplex.objects.all())
+ @property
+ def name(self):
+ all_protein_names = set([ppi_complex.complex.protein.short_name for ppi_complex in self.get_ppi_complexes()])
+ bound_protein_names = set([ppi_complex.complex.protein.short_name for ppi_complex in self.get_ppi_bound_complexes()])
+ partner_protein_names = all_protein_names - bound_protein_names
+ bound_str = ','.join(bound_protein_names)
+ partner_str = ','.join(partner_protein_names)
+ name = bound_str
+ if partner_str!='':
+ name += ' / ' + partner_str
+ return name
class PpiComplex(models.Model):
ppi = models.ForeignKey(Ppi)
--
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